Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IR04_RS20865 Genome accession   NZ_CP009042
Coordinates   2978400..2979260 (+) Length   286 a.a.
NCBI ID   WP_001884047.1    Uniprot ID   Q9KNL3
Organism   Vibrio cholerae O1 biovar El Tor strain FJ147     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2973400..2984260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR04_RS18700 (IR04_18625) greB 2973928..2974413 (-) 486 WP_000850496.1 transcription elongation factor GreB -
  IR04_RS18705 (IR04_18630) - 2974658..2976979 (+) 2322 WP_000030087.1 Tex family protein -
  IR04_RS18710 (IR04_18635) - 2977071..2977541 (-) 471 WP_000961392.1 hypothetical protein -
  IR04_RS18715 (IR04_18640) bioH 2977703..2978464 (-) 762 WP_001240449.1 pimeloyl-ACP methyl ester esterase BioH -
  IR04_RS20865 comF 2978400..2979260 (+) 861 WP_001884047.1 ComF family protein Machinery gene
  IR04_RS18725 (IR04_18650) nfuA 2979348..2979935 (+) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  IR04_RS18730 (IR04_18655) nudE 2980074..2980622 (+) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  IR04_RS18735 (IR04_18660) cysQ 2980645..2981472 (+) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  IR04_RS18740 (IR04_18665) - 2981524..2982282 (-) 759 WP_000817146.1 type II secretion system protein N -
  IR04_RS18745 (IR04_18670) gspM 2982284..2982781 (-) 498 WP_000661339.1 type II secretion system protein GspM -
  IR04_RS18750 (IR04_18675) gspL 2982791..2984002 (-) 1212 WP_001288747.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32545.47 Da        Isoelectric Point: 8.0588

>NTDB_id=126294 IR04_RS20865 WP_001884047.1 2978400..2979260(+) (comF) [Vibrio cholerae O1 biovar El Tor strain FJ147]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANMLNVEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=126294 IR04_RS20865 WP_001884047.1 2978400..2979260(+) (comF) [Vibrio cholerae O1 biovar El Tor strain FJ147]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGTCGACTGGCGCTAGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATATGCTGAACGTTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCGACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

100

100

1
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment