Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   VT08_RS08100 Genome accession   NZ_CP011069
Coordinates   1654641..1655909 (+) Length   422 a.a.
NCBI ID   WP_002982538.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain STAB09014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1649641..1660909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT08_RS08075 (VT08_08095) - 1649809..1650558 (-) 750 WP_011285203.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  VT08_RS08080 (VT08_08100) prmA 1650558..1651511 (-) 954 WP_011285204.1 50S ribosomal protein L11 methyltransferase -
  VT08_RS08085 (VT08_08105) - 1651581..1652051 (-) 471 WP_011285205.1 DUF3013 family protein -
  VT08_RS08090 (VT08_08110) pabB 1652252..1654009 (+) 1758 WP_021340937.1 aminodeoxychorismate synthase component I -
  VT08_RS08095 (VT08_08115) - 1654042..1654608 (+) 567 WP_011285207.1 aminodeoxychorismate/anthranilate synthase component II -
  VT08_RS08100 (VT08_08120) rarA 1654641..1655909 (+) 1269 WP_002982538.1 replication-associated recombination protein A Machinery gene
  VT08_RS08115 (VT08_08130) - 1656408..1656848 (+) 441 WP_011018265.1 GNAT family N-acetyltransferase -
  VT08_RS08120 (VT08_08135) - 1656903..1657409 (+) 507 WP_011285208.1 DNA topology modulation protein -
  VT08_RS08125 (VT08_08140) - 1657658..1658359 (+) 702 WP_011285209.1 exotoxin beta-grasp domain-containing protein -
  VT08_RS08130 (VT08_08145) - 1659089..1660717 (+) 1629 WP_021340946.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46645.07 Da        Isoelectric Point: 6.3774

>NTDB_id=126080 VT08_RS08100 WP_002982538.1 1654641..1655909(+) (rarA) [Streptococcus pyogenes strain STAB09014]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=126080 VT08_RS08100 WP_002982538.1 1654641..1655909(+) (rarA) [Streptococcus pyogenes strain STAB09014]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATAGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGTAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59