Detailed information NTG0125210

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: vpachn25_RS05975
• Genome accession: NZ_CP010883
• Coordinates: 1296495..1297784 (+)
• Length: 429 a.a.
• NCBI ID: WP_021447448.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain CHN25
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1291495..1302784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
vpachn25_RS05960 (VpaChn25_1115)	lrp	1291994..1292488 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
vpachn25_RS05965 (VpaChn25_1116)	-	1292641..1295727 (+)	3087	WP_065870513.1	DNA translocase FtsK	-
vpachn25_RS05970 (VpaChn25_1117)	lolA	1295802..1296428 (+)	627	WP_025506069.1	outer membrane lipoprotein chaperone LolA	-
vpachn25_RS05975 (VpaChn25_1118)	rarA	1296495..1297784 (+)	1290	WP_021447448.1	replication-associated recombination protein A	Machinery gene
vpachn25_RS05980 (VpaChn25_1119)	serS	1297876..1299183 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
vpachn25_RS05985 (VpaChn25_1120)	-	1299553..1300119 (+)	567	WP_237283207.1	ATPase	-
vpachn25_RS05990 (VpaChn25_1121)	-	1300113..1300553 (+)	441	WP_023624011.1	hypothetical protein	-
vpachn25_RS05995 (VpaChn25_1122)	-	1300688..1300954 (+)	267	WP_025587222.1	DksA/TraR family C4-type zinc finger protein	-
vpachn25_RS06000 (VpaChn25_1123)	bioA	1301024..1302304 (-)	1281	WP_020903988.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47564.76 Da
• Isoelectric Point: 5.8532

>NTDB_id=125210 vpachn25_RS05975 WP_021447448.1 1296495..1297784(+) (rarA) [Vibrio parahaemolyticus strain CHN25]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=125210 vpachn25_RS05975 WP_021447448.1 1296495..1297784(+) (rarA) [Vibrio parahaemolyticus strain CHN25]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGACCCACTTTACATTGCCCGCCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGATGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385