Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RDF_RS09605 Genome accession   NZ_CP010867
Coordinates   1915027..1916295 (+) Length   422 a.a.
NCBI ID   WP_000774765.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1910027..1921295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS09560 (RDF_1867) - 1910095..1910559 (-) 465 WP_306425667.1 MepB family protein -
  RDF_RS09565 (RDF_1868) - 1910677..1911393 (+) 717 WP_000859570.1 MerR family transcriptional regulator -
  RDF_RS09570 (RDF_1869) - 1911432..1911902 (-) 471 WP_000631754.1 GNAT family N-acetyltransferase -
  RDF_RS09575 (RDF_1870) - 1911874..1912332 (-) 459 WP_000376720.1 NUDIX hydrolase -
  RDF_RS11245 (RDF_1871) - 1912325..1912633 (-) 309 WP_001868493.1 hypothetical protein -
  RDF_RS09585 (RDF_1872) - 1912676..1913146 (-) 471 WP_001051338.1 DUF3013 family protein -
  RDF_RS09590 (RDF_1873) - 1913220..1913747 (-) 528 WP_001031199.1 DUF3278 domain-containing protein -
  RDF_RS09595 (RDF_1874) - 1913750..1913938 (-) 189 WP_001082462.1 helix-turn-helix transcriptional regulator -
  RDF_RS09600 (RDF_1875) - 1914543..1915034 (+) 492 WP_000586892.1 GNAT family N-acetyltransferase -
  RDF_RS09605 (RDF_1876) rarA 1915027..1916295 (+) 1269 WP_000774765.1 replication-associated recombination protein A Machinery gene
  RDF_RS09615 (RDF_1877) - 1916819..1917124 (-) 306 WP_000511798.1 hypothetical protein -
  RDF_RS09620 (RDF_1878) - 1917108..1917509 (-) 402 WP_000517024.1 hypothetical protein -
  RDF_RS11575 (RDF_1879) - 1917497..1918489 (-) 993 WP_001868480.1 hypothetical protein -
  RDF_RS11580 (RDF_1880) - 1918489..1918704 (-) 216 WP_001868474.1 hypothetical protein -
  RDF_RS09635 (RDF_1881) - 1918706..1919038 (-) 333 WP_000792756.1 hypothetical protein -
  RDF_RS09640 - 1920097..1920414 (+) 318 WP_000134167.1 hypothetical protein -
  RDF_RS11475 (RDF_1883) - 1920463..1920591 (+) 129 WP_000562552.1 hypothetical protein -
  RDF_RS11510 - 1920546..1920710 (+) 165 Protein_1850 site-specific integrase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46611.03 Da        Isoelectric Point: 6.6718

>NTDB_id=124874 RDF_RS09605 WP_000774765.1 1915027..1916295(+) (rarA) [Streptococcus agalactiae strain SS1]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMNAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=124874 RDF_RS09605 WP_000774765.1 1915027..1916295(+) (rarA) [Streptococcus agalactiae strain SS1]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGAATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588

Multiple sequence alignment