Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HYU01_RS19175 Genome accession   NZ_CP008846
Coordinates   3628308..3629087 (-) Length   259 a.a.
NCBI ID   WP_038414191.1    Uniprot ID   -
Organism   Bacillus anthracis strain HYU01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3623308..3634087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYU01_RS19150 (HYU01_19355) uppS 3624054..3624830 (-) 777 WP_000971301.1 isoprenyl transferase -
  HYU01_RS19155 (HYU01_19360) frr 3624916..3625473 (-) 558 WP_000531503.1 ribosome recycling factor -
  HYU01_RS19160 (HYU01_19365) pyrH 3625476..3626198 (-) 723 WP_000042663.1 UMP kinase -
  HYU01_RS19165 (HYU01_19370) tsf 3626265..3627152 (-) 888 WP_001018581.1 translation elongation factor Ts -
  HYU01_RS19170 (HYU01_19375) rpsB 3627256..3627957 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  HYU01_RS19175 (HYU01_19380) codY 3628308..3629087 (-) 780 WP_038414191.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HYU01_RS19180 (HYU01_19385) hslU 3629165..3630556 (-) 1392 WP_025440291.1 ATP-dependent protease ATPase subunit HslU -
  HYU01_RS19185 (HYU01_19390) hslV 3630579..3631121 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  HYU01_RS19190 (HYU01_19395) xerC 3631164..3632063 (-) 900 WP_001101226.1 tyrosine recombinase XerC -
  HYU01_RS19195 (HYU01_19400) trmFO 3632129..3633433 (-) 1305 WP_001991958.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28804.07 Da        Isoelectric Point: 4.7947

>NTDB_id=124722 HYU01_RS19175 WP_038414191.1 3628308..3629087(-) (codY) [Bacillus anthracis strain HYU01]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKTVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=124722 HYU01_RS19175 WP_038414191.1 3628308..3629087(-) (codY) [Bacillus anthracis strain HYU01]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAACTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

80.695

100

0.807
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.059

98.456

0.463

Multiple sequence alignment