Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   TO73_RS11030 Genome accession   NZ_CP010822
Coordinates   2072145..2073413 (+) Length   422 a.a.
NCBI ID   WP_155982889.1    Uniprot ID   -
Organism   Thermus aquaticus Y51MC23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2067145..2078413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO73_RS11005 (TO73_2289) - 2067467..2068156 (-) 690 WP_003046457.1 gamma carbonic anhydrase family protein -
  TO73_RS11010 (TO73_2290) - 2068137..2068517 (-) 381 WP_003046454.1 NUDIX domain-containing protein -
  TO73_RS11015 (TO73_2291) - 2068508..2069371 (-) 864 WP_003046452.1 DUF1028 domain-containing protein -
  TO73_RS11020 (TO73_2292) typA 2069424..2071187 (+) 1764 WP_003046449.1 translational GTPase TypA -
  TO73_RS11025 (TO73_2293) - 2071421..2072104 (-) 684 WP_003046446.1 hypothetical protein -
  TO73_RS11030 (TO73_2294) rarA 2072145..2073413 (+) 1269 WP_155982889.1 replication-associated recombination protein A Machinery gene
  TO73_RS11035 (TO73_2295) - 2073583..2074368 (-) 786 WP_040684352.1 carbohydrate ABC transporter permease -
  TO73_RS11040 (TO73_2296) - 2074444..2074809 (-) 366 WP_003046436.1 DUF86 domain-containing protein -
  TO73_RS11045 (TO73_2297) - 2074806..2075090 (-) 285 WP_231623740.1 nucleotidyltransferase family protein -
  TO73_RS11050 (TO73_2298) - 2075281..2076489 (+) 1209 WP_003046432.1 CaiB/BaiF CoA-transferase family protein -
  TO73_RS11060 (TO73_2418) - 2076689..2077567 (+) 879 WP_003046427.1 ABC transporter ATP-binding protein -
  TO73_RS11065 (TO73_2299) - 2077560..2078330 (+) 771 WP_003046423.1 ABC transporter permease -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46142.01 Da        Isoelectric Point: 7.2539

>NTDB_id=124689 TO73_RS11030 WP_155982889.1 2072145..2073413(+) (rarA) [Thermus aquaticus Y51MC23]
MKGMEPLAERLRPRTLDEVLGQPHLTGERGLLRRMLEAKRLASMVLFGPPGTGKTTLAHLLAEGAGKPFLRLSAVEAGLK
EVRQAVERARQEGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFLLTPALRSRLRLFPLRPLSQEDLLAL
LRRALEDPRGLPGVAYEEEALRLLAQAAEGDARFALNTLELAAAFGKVDLKSVREALGAERLGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLEGGADPRYLARRLIRVALEDVGLADPLALRLSVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYQAWKRAEEAAKAHPEAPVPLNLRNAPTALARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLYEATGEGFEE
RVRERLKALRGQFQSARPPKGG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=124689 TO73_RS11030 WP_155982889.1 2072145..2073413(+) (rarA) [Thermus aquaticus Y51MC23]
ATCAAGGGGATGGAGCCCCTGGCGGAGCGCCTGCGCCCCAGGACCCTGGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
GGAACGGGGGCTTCTCCGGCGGATGCTGGAGGCGAAGAGGCTCGCCTCCATGGTCCTCTTTGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCACCTCCTGGCCGAGGGAGCGGGAAAGCCCTTCCTGAGGCTCTCCGCTGTGGAGGCCGGGCTCAAG
GAGGTGCGCCAGGCGGTGGAAAGGGCCAGGCAGGAAGGGGGCCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTGATCGGGGCCACGGCGGAAAACCCCGCCT
TCCTCCTCACCCCCGCCCTACGCTCCCGCCTCCGCCTCTTCCCCCTGAGGCCCCTCTCCCAGGAGGACCTCCTCGCCCTC
CTCAGGCGGGCCCTCGAGGACCCCAGGGGCCTTCCCGGCGTGGCCTACGAGGAGGAGGCCCTCCGCCTCCTGGCCCAGGC
GGCGGAAGGGGACGCCCGCTTCGCCCTGAACACCCTGGAGCTGGCCGCCGCCTTCGGGAAGGTGGACTTAAAGAGCGTGC
GGGAGGCTTTGGGGGCAGAACGGCTCGGCATGGACCGGGAGGGGGACCGGTTTTACGACCTGGTCTCCGCCTTGCACAAA
AGCCTCCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTAGAGGGCGGGGCCGACCCCCGGTACCT
GGCCCGGAGGCTCATCCGGGTGGCCCTCGAGGACGTGGGCCTGGCAGACCCCCTGGCCCTTAGGCTTTCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTGGCCCTGGTGGAGGCGGCGGTCTATCTGGCCCTGGCCCCC
AAGTCCAACAGCCTCTACCAGGCCTGGAAGCGGGCGGAGGAGGCCGCAAAGGCCCACCCCGAGGCCCCCGTGCCCCTGAA
CCTGAGGAACGCCCCCACCGCCTTGGCCAGGGCCTTGGGGCACGGGGAGGGCTACGCCTACTACCACGAGGACAAGGAGG
GGAGCTTCGCCCAAAGGTACCTGCCGGAGGGCCTCGAGGGCCTCACCCTCTACGAGGCCACGGGGGAGGGCTTTGAGGAG
CGGGTGCGGGAGAGGTTGAAGGCTCTCAGGGGGCAGTTCCAAAGCGCCAGGCCGCCGAAAGGTGGATAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

AAA C-terminal domain (AAA_assoc_2)

(174-243)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.709

97.867

0.389