Detailed information NTG0124648

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: TO73_RS00515
• Genome accession: NZ_CP010822
• Coordinates: 86846..87913 (-)
• Length: 355 a.a.
• NCBI ID: WP_003046982.1
• Uniprot ID: A0ABM5VIP1
• Organism: Thermus aquaticus Y51MC23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 81846..92913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TO73_RS00490 (TO73_0109)	cas1	82527..83477 (-)	951	WP_003046974.1	CRISPR-associated endonuclease Cas1	-
TO73_RS00495 (TO73_0110)	-	83477..84682 (-)	1206	WP_003046977.1	TIGR02710 family CRISPR-associated CARF protein	-
TO73_RS00500 (TO73_0111)	-	84714..85328 (+)	615	WP_003046979.1	LysM peptidoglycan-binding domain-containing C40 family peptidase	-
TO73_RS00505 (TO73_2394)	-	85325..86245 (-)	921	WP_003046980.1	nitroreductase family protein	-
TO73_RS00510 (TO73_0112)	-	86262..86765 (-)	504	WP_003046981.1	DUF2939 domain-containing protein	-
TO73_RS00515 (TO73_0113)	pilD	86846..87913 (-)	1068	WP_003046982.1	A24 family peptidase	Machinery gene
TO73_RS00520 (TO73_0114)	-	87972..89507 (+)	1536	WP_003046983.1	carboxypeptidase M32	-
TO73_RS00525 (TO73_0115)	-	89619..89915 (-)	297	WP_040684395.1	nucleotide pyrophosphohydrolase	-
TO73_RS00530 (TO73_0116)	-	89945..90976 (-)	1032	WP_003046985.1	M42 family metallopeptidase	-
TO73_RS00535 (TO73_0117)	mgsA	90999..91379 (+)	381	WP_003046986.1	methylglyoxal synthase	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 37948.41 Da
• Isoelectric Point: 8.9512

>NTDB_id=124648 TO73_RS00515 WP_003046982.1 86846..87913(-) (pilD) [Thermus aquaticus Y51MC23]
MWPLFALVLGLVIGSFLNVVIHRLPKGESLAYPPSYCPSCGHRLGPKDLVPVLSYLALRGRCRYCQSPISPRYPLVEAIT
GSLFLLAALFYPPSPMAFLVFAFLAFLVALAFIDLDTYELPDALTYGLLFLGLAASYFLAFPLPFRKSLDGALMAAGGLG
LVAGYGGLFLRRFRERRPEVPVGPHQVHMAALLGALLGPGVGMALAFLTWALSARTGRPVVLPDRLTLPLLPVALLLAPA
LGLDLLESLKGSLVAAGGLALAGGLYWAFRPAPPEEEEEPVAMGYGDVKLLGALGAWLGLYAFLALLLAVFLGAAFGLVL
RRQKIPFGPYLALGGVVAFFFGEAIWKAYLHLLGI

Nucleotide

• Length: 1068 bp

>NTDB_id=124648 TO73_RS00515 WP_003046982.1 86846..87913(-) (pilD) [Thermus aquaticus Y51MC23]
ATGTGGCCCCTTTTCGCCCTGGTCCTGGGCCTGGTGATAGGCTCCTTCCTCAACGTGGTCATCCACCGCCTGCCCAAAGG
GGAGTCCCTGGCCTATCCCCCCTCCTACTGCCCAAGCTGTGGCCACCGCTTGGGCCCCAAAGACCTGGTCCCCGTCCTCT
CCTACCTGGCCCTAAGGGGGCGGTGCCGCTACTGCCAAAGCCCCATAAGCCCCCGCTACCCCCTGGTGGAGGCCATCACC
GGCTCCCTTTTCCTCCTGGCCGCCCTCTTCTACCCGCCTTCCCCCATGGCCTTTTTGGTCTTCGCCTTCCTCGCCTTTCT
GGTGGCCCTCGCCTTCATTGACCTGGACACCTACGAGCTTCCCGATGCCCTCACCTACGGCCTCCTCTTCCTGGGCCTCG
CCGCCTCCTACTTCCTCGCCTTCCCTCTCCCCTTCAGGAAGAGCCTGGACGGGGCCCTGATGGCGGCGGGGGGCCTGGGC
CTGGTGGCCGGGTACGGGGGGCTTTTCCTGAGGCGCTTCCGGGAGAGGAGGCCCGAGGTCCCCGTGGGCCCCCACCAGGT
GCACATGGCCGCCCTCTTGGGAGCCCTCCTGGGCCCCGGGGTGGGGATGGCCCTGGCCTTCCTCACCTGGGCCCTCTCGG
CGAGAACGGGTAGGCCCGTGGTCCTCCCCGACCGGCTCACCCTCCCCCTCCTTCCCGTGGCCCTCCTCCTGGCCCCCGCC
CTGGGCCTGGACCTTCTGGAAAGCCTGAAGGGAAGCCTCGTCGCCGCCGGGGGGCTCGCCCTGGCCGGAGGGCTTTACTG
GGCCTTCCGGCCCGCCCCGCCCGAAGAAGAGGAGGAGCCGGTCGCCATGGGCTACGGGGACGTGAAGCTTTTAGGGGCCC
TCGGGGCCTGGCTTGGGCTTTACGCCTTTTTGGCGCTTCTTCTCGCCGTCTTCCTGGGGGCGGCCTTTGGGCTCGTCCTT
AGAAGGCAGAAAATCCCCTTTGGCCCCTACCTGGCCCTGGGAGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCATCTGGAA
AGCGTACCTTCACCTACTGGGCATTTGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (220-318)

• Type IV leader peptidase family (Peptidase_A24) (102-205)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-89)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	45.288	100	0.487