Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | VAB027_RS09125 | Genome accession | NZ_CP010812 |
| Coordinates | 1911053..1912402 (+) | Length | 449 a.a. |
| NCBI ID | WP_046126601.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain 10432-62 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1906053..1917402
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VAB027_RS09100 (VAB027_1784) | - | 1906130..1906924 (+) | 795 | WP_000620368.1 | ABC transporter ATP-binding protein | - |
| VAB027_RS09105 (VAB027_1786) | - | 1907092..1908561 (+) | 1470 | WP_046126597.1 | sensor domain-containing diguanylate cyclase | - |
| VAB027_RS09110 (VAB027_1785) | dusC | 1908558..1909550 (-) | 993 | WP_046126598.1 | tRNA dihydrouridine(16) synthase DusC | - |
| VAB027_RS09115 (VAB027_1787) | - | 1909716..1910336 (+) | 621 | WP_046126599.1 | YecA family protein | - |
| VAB027_RS09120 (VAB027_1788) | lolA | 1910432..1911028 (+) | 597 | WP_046126600.1 | outer membrane lipoprotein chaperone LolA | - |
| VAB027_RS09125 (VAB027_1789) | rarA | 1911053..1912402 (+) | 1350 | WP_046126601.1 | replication-associated recombination protein A | Machinery gene |
| VAB027_RS09130 (VAB027_1790) | serS | 1912506..1913813 (+) | 1308 | WP_000887349.1 | serine--tRNA ligase | - |
| VAB027_RS09135 (VAB027_1791) | bioA | 1913921..1915201 (-) | 1281 | Protein_1768 | adenosylmethionine--8-amino-7-oxononanoate transaminase | - |
| VAB027_RS09140 (VAB027_1793) | bioB | 1915334..1916386 (+) | 1053 | WP_046126602.1 | biotin synthase BioB | - |
Sequence
Protein
Download Length: 449 a.a. Molecular weight: 49834.31 Da Isoelectric Point: 6.0310
>NTDB_id=124510 VAB027_RS09125 WP_046126601.1 1911053..1912402(+) (rarA) [Vibrio cholerae strain 10432-62]
MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAE
VASEKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQVALAAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPSHLRNAPTRLMKDLGYGEEYRYAHDEPGAY
AAGECYFPPEMSGTRYYQPTQRGLETKIAEKLAYLADLNAKSPQKRYEK
MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLNQQEILQALHQAIADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAE
VASEKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQVALAAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPSHLRNAPTRLMKDLGYGEEYRYAHDEPGAY
AAGECYFPPEMSGTRYYQPTQRGLETKIAEKLAYLADLNAKSPQKRYEK
Nucleotide
Download Length: 1350 bp
>NTDB_id=124510 VAB027_RS09125 WP_046126601.1 1911053..1912402(+) (rarA) [Vibrio cholerae strain 10432-62]
GTGAGTAATTACAGCTTAGATTTTTCCGGCGACGAAGATTTTCGTCCGTTAGCTGCCCGTATGCGTCCACAAACCGTGGA
GCAGTATATTGGTCAGCAACACATCTTAGGGCCGGGAAAACCGCTGCGCCGTGCATTAGAAGCGGGGCATATTCACTCGA
TGATTCTTTGGGGACCTCCGGGCACCGGAAAAACCACTTTAGCCGAAGTGGCAGCCAACTACGCGAATGCGGAAGTGGAA
CGCGTATCGGCAGTGACGTCCGGAGTCAAAGAGATCCGTGCCGCGATCGAAAAAGCGCGTGAGAACAAACTCAGTGGTCG
TCGCACTATTTTGTTTGTCGACGAAGTCCATCGCTTTAATAAATCGCAGCAAGATGCGTTTTTGCCGCATATTGAAGACG
GCACGGTCACTTTTATTGGTGCAACCACGGAAAACCCTTCTTTTGAGCTTAATAACGCGCTGCTTTCCCGCGCGCGGGTT
TATAAGCTCACCTCACTCAATCAACAAGAAATTCTGCAAGCTCTGCATCAAGCGATTGCCGATACTGAACGCGGGCTTGG
CAAAGTGGCGGCTGTATTTGCTGATAACGTGTTGGATCGCCTAGCCGAACTGGTGAATGGCGATGCGCGCATGTCGCTCA
ACTATCTTGAGCTGCTGTATGACATGGCTCGCGAAGATGATCAGGGACGCAAGCAGATTGATCTGCCTTTATTGGCTGAA
GTCGCTAGTGAAAAAGTGTCGCGCTTTGATAACAAGGGCGATATTTGGTATGACCTGATTTCCGCTGTACACAAGTCGAT
TCGAGGTTCTGATCCCGATGCGGCTCTGTATTGGGCGGCGCGGATGATTTCCGCAGGCTGTGACCCTTTGTATATCGCGC
GCCGTCTGCTCGCGATTGCCTCTGAAGATGTTGGTAATGCCGACCCACGGGGCATGCAAGTGGCACTCGCAGCGTGGGAT
TGCTTTACCCGTGTGGGGCCTGCAGAAGGCGAGCGCGCGATTGCTCAAGCGATTGTCTATTTGGCGTGCGCGCCGAAAAG
CAATGCGGTGTACACCGCGTGGAAACAAGCGCTGTCGGATGCGCATAATCTGCCTGAGTTTGAAGTACCGTCGCATCTGC
GTAATGCCCCAACGCGATTGATGAAAGATCTCGGTTATGGTGAGGAATACCGTTACGCCCATGATGAACCGGGCGCTTAT
GCTGCAGGGGAGTGCTATTTCCCACCAGAAATGAGTGGAACTCGCTACTATCAGCCTACTCAACGCGGGCTAGAAACTAA
GATTGCTGAAAAGTTAGCGTATCTGGCGGATTTGAACGCAAAAAGCCCACAAAAGCGCTATGAAAAGTAG
GTGAGTAATTACAGCTTAGATTTTTCCGGCGACGAAGATTTTCGTCCGTTAGCTGCCCGTATGCGTCCACAAACCGTGGA
GCAGTATATTGGTCAGCAACACATCTTAGGGCCGGGAAAACCGCTGCGCCGTGCATTAGAAGCGGGGCATATTCACTCGA
TGATTCTTTGGGGACCTCCGGGCACCGGAAAAACCACTTTAGCCGAAGTGGCAGCCAACTACGCGAATGCGGAAGTGGAA
CGCGTATCGGCAGTGACGTCCGGAGTCAAAGAGATCCGTGCCGCGATCGAAAAAGCGCGTGAGAACAAACTCAGTGGTCG
TCGCACTATTTTGTTTGTCGACGAAGTCCATCGCTTTAATAAATCGCAGCAAGATGCGTTTTTGCCGCATATTGAAGACG
GCACGGTCACTTTTATTGGTGCAACCACGGAAAACCCTTCTTTTGAGCTTAATAACGCGCTGCTTTCCCGCGCGCGGGTT
TATAAGCTCACCTCACTCAATCAACAAGAAATTCTGCAAGCTCTGCATCAAGCGATTGCCGATACTGAACGCGGGCTTGG
CAAAGTGGCGGCTGTATTTGCTGATAACGTGTTGGATCGCCTAGCCGAACTGGTGAATGGCGATGCGCGCATGTCGCTCA
ACTATCTTGAGCTGCTGTATGACATGGCTCGCGAAGATGATCAGGGACGCAAGCAGATTGATCTGCCTTTATTGGCTGAA
GTCGCTAGTGAAAAAGTGTCGCGCTTTGATAACAAGGGCGATATTTGGTATGACCTGATTTCCGCTGTACACAAGTCGAT
TCGAGGTTCTGATCCCGATGCGGCTCTGTATTGGGCGGCGCGGATGATTTCCGCAGGCTGTGACCCTTTGTATATCGCGC
GCCGTCTGCTCGCGATTGCCTCTGAAGATGTTGGTAATGCCGACCCACGGGGCATGCAAGTGGCACTCGCAGCGTGGGAT
TGCTTTACCCGTGTGGGGCCTGCAGAAGGCGAGCGCGCGATTGCTCAAGCGATTGTCTATTTGGCGTGCGCGCCGAAAAG
CAATGCGGTGTACACCGCGTGGAAACAAGCGCTGTCGGATGCGCATAATCTGCCTGAGTTTGAAGTACCGTCGCATCTGC
GTAATGCCCCAACGCGATTGATGAAAGATCTCGGTTATGGTGAGGAATACCGTTACGCCCATGATGAACCGGGCGCTTAT
GCTGCAGGGGAGTGCTATTTCCCACCAGAAATGAGTGGAACTCGCTACTATCAGCCTACTCAACGCGGGCTAGAAACTAA
GATTGCTGAAAAGTTAGCGTATCTGGCGGATTTGAACGCAAAAAGCCCACAAAAGCGCTATGAAAAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
39.512 |
91.314 |
0.361 |