Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ABA1_RS12380 Genome accession   NZ_CP010781
Coordinates   2595950..2597707 (-) Length   585 a.a.
NCBI ID   WP_001020910.1    Uniprot ID   A0A0D5YH74
Organism   Acinetobacter baumannii strain A1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2590950..2602707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA1_RS12350 (ABA1_02472) - 2591538..2592089 (+) 552 WP_000913439.1 tetratricopeptide repeat protein -
  ABA1_RS12355 (ABA1_02473) - 2592111..2593010 (-) 900 WP_001125741.1 NUDIX domain-containing protein -
  ABA1_RS12360 (ABA1_02474) hemP 2593147..2593317 (+) 171 WP_000993415.1 hemin uptake protein HemP -
  ABA1_RS12365 (ABA1_02475) - 2593384..2594742 (-) 1359 WP_000841565.1 sensor histidine kinase -
  ABA1_RS12370 (ABA1_02476) - 2594739..2595401 (-) 663 WP_001221450.1 response regulator transcription factor -
  ABA1_RS12375 (ABA1_02477) - 2595509..2595868 (-) 360 WP_000783090.1 NirD/YgiW/YdeI family stress tolerance protein -
  ABA1_RS12380 (ABA1_02478) pilB 2595950..2597707 (-) 1758 WP_001020910.1 GspE/PulE family protein Machinery gene
  ABA1_RS12385 (ABA1_02479) - 2597995..2599263 (+) 1269 WP_001052957.1 MgtC/SapB family protein -
  ABA1_RS12390 (ABA1_02480) tsaA 2599273..2600001 (-) 729 WP_001985377.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ABA1_RS12395 (ABA1_02481) - 2600106..2600885 (+) 780 WP_000718711.1 ferredoxin--NADP reductase -
  ABA1_RS12400 (ABA1_02482) - 2600940..2601809 (-) 870 WP_000117593.1 PhzF family phenazine biosynthesis protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66810.51 Da        Isoelectric Point: 7.0124

>NTDB_id=124338 ABA1_RS12380 WP_001020910.1 2595950..2597707(-) (pilB) [Acinetobacter baumannii strain A1]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLSVQPFLTAATILGVLAQRLVRKLCPNCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGSTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=124338 ABA1_RS12380 WP_001020910.1 2595950..2597707(-) (pilB) [Acinetobacter baumannii strain A1]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGACAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATCTAA
AAGACCAACACCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGAATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAGGCGCTTTTACA
ACTTGGTGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATATTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCACATGGAACCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCCGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGATTAAAAACACGTACGCCGAAAGGCCAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTGTTAGTACGTTCTTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTGGTTACGGGGCCAACAGGTTC
TGGTAAAACTACAACGTTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAGGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACATACCAATGATGCGCCGTCTAGTTTGACCCGTTTACACGATTTAAGCG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCACAGCGCTTAGTGCGTAAGCTTTGCCCAAACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTCGACCACCTTGGAAGAGGTGCTGCGAGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)

Type II/IV secretion system protein (T2SSE)

(209-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YH74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.993

100

0.374

Multiple sequence alignment