Detailed information NTG0124031

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: SHYC_RS06270
• Genome accession: NZ_CP008747
• Coordinates: 1320911..1323283 (+)
• Length: 790 a.a.
• NCBI ID: WP_039645434.1
• Uniprot ID: -
• Organism: Staphylococcus hyicus strain ATCC 11249
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1315911..1328283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SHYC_RS06245 (SHYC_06445)	-	1316242..1316427 (+)	186	WP_039645424.1	CsbD family protein	-
SHYC_RS12370 (SHYC_06450)	-	1316511..1316675 (+)	165	WP_167696560.1	hypothetical protein	-
SHYC_RS06250 (SHYC_06455)	-	1316709..1317716 (-)	1008	WP_039645426.1	LLM class flavin-dependent oxidoreductase	-
SHYC_RS06255 (SHYC_06460)	-	1317938..1319083 (+)	1146	WP_039645428.1	cysteine desulfurase family protein	-
SHYC_RS06260 (SHYC_06465)	mnmA	1319080..1320192 (+)	1113	WP_039645430.1	tRNA 2-thiouridine(34) synthase MnmA	-
SHYC_RS06265 (SHYC_06470)	-	1320233..1320907 (+)	675	WP_039645432.1	tetratricopeptide repeat protein	-
SHYC_RS06270 (SHYC_06475)	recD2	1320911..1323283 (+)	2373	WP_039645434.1	ATP-dependent RecD-like DNA helicase	Machinery gene
SHYC_RS06275 (SHYC_06480)	alaS	1323515..1326145 (+)	2631	WP_039645436.1	alanine--tRNA ligase	-
SHYC_RS06280 (SHYC_06485)	-	1326209..1326481 (+)	273	WP_039645438.1	IreB family regulatory phosphoprotein	-
SHYC_RS06285 (SHYC_06490)	ruvX	1326474..1326902 (+)	429	WP_039645440.1	Holliday junction resolvase RuvX	-
SHYC_RS06290 (SHYC_06495)	-	1326917..1327237 (+)	321	WP_039645442.1	DUF1292 domain-containing protein	-
SHYC_RS06295 (SHYC_06500)	-	1327502..1328146 (+)	645	WP_039645444.1	O-methyltransferase	-

Sequence

Protein

• Length: 790 a.a.
• Molecular weight: 89586.21 Da
• Isoelectric Point: 4.7819

>NTDB_id=124031 SHYC_RS06270 WP_039645434.1 1320911..1323283(+) (recD2) [Staphylococcus hyicus strain ATCC 11249]
MENPTLFEQTYIKGNIDVILFQNSDNYYTVLKVDVEDSNEDFDNMATVVGYFPNIVEGETYTFKGQVAEHPRYGKQLKAE
TFQKEIPQTREAIIQYLSSDLFKGVGKKTAESIVDTLGDHTIQSILKDATVLEQVPKLSKAKQQQIADQVYQNQESEQIM
IRLNELGFGAKLAMDIYKFYKVDTLKIIDENPYQLVYDIRGVGFQKADQLARLIGISYTHPNRLKAGIQYIIEEICIKQG
HTYLPKDTLMKESSVLLTKQNETTIDSAMLEDVFMQLIEEKRLVDDDGHIAIPSLFYSELKSSQNVYKLMSNNVRIDTFD
QSDIQMHIGEIEETHGVSYAEAQKEALEAAMKNKLMILTGGPGTGKTTVIKGIVHLYATLHGISLNYDDYGDEDYPVVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQDTKPEDILDHAIHAKLIIIDEMSMVDTWLFHQFMAAVPEDAQVVLVGDEDQ
LPSVGPGQVFRDLITSKALPRINLIEVYRQQDGSSIIELAHKMKAGLNVDITERFHDRSFIPCHIDQIPEVVRKVVTNAV
KKGYDMSDIQVLAPMYRGNAGIHKLNKVLQDILNPIEDDDTREIQFGDVVYRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVVIVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGDADAFNIGIKTEGQVRLTRQQMFLEQYFNTDSETNQPVQLSEETMFKIDPMINMKNVTPYDFMEIDNV

Nucleotide

• Length: 2373 bp

>NTDB_id=124031 SHYC_RS06270 WP_039645434.1 1320911..1323283(+) (recD2) [Staphylococcus hyicus strain ATCC 11249]
GTGGAAAACCCAACACTATTTGAACAGACATATATTAAAGGCAACATCGATGTCATTCTCTTTCAAAATAGTGATAATTA
TTACACTGTCCTGAAAGTAGACGTTGAAGATTCTAATGAAGACTTCGACAATATGGCTACAGTTGTTGGGTATTTTCCAA
ATATCGTTGAAGGTGAGACGTATACGTTTAAGGGACAAGTCGCAGAACATCCCCGTTATGGCAAGCAATTAAAGGCTGAA
ACGTTTCAAAAAGAAATACCTCAAACAAGAGAGGCTATCATACAATATTTATCAAGTGATTTATTTAAGGGTGTTGGAAA
AAAAACTGCTGAATCTATCGTAGATACATTAGGTGATCATACCATTCAATCTATTTTAAAAGATGCTACAGTTCTTGAAC
AAGTTCCTAAATTATCCAAAGCCAAACAACAGCAAATCGCTGATCAAGTGTATCAAAATCAAGAAAGCGAACAGATTATG
ATTCGTTTAAATGAACTTGGTTTCGGTGCAAAACTCGCCATGGATATTTATAAATTTTATAAAGTTGACACATTAAAAAT
TATTGACGAAAACCCTTACCAACTGGTATATGATATCCGCGGTGTTGGATTTCAAAAAGCGGATCAACTCGCACGTTTAA
TTGGCATTTCATATACGCATCCCAACCGATTAAAAGCTGGGATACAATACATAATTGAAGAAATATGTATTAAACAAGGG
CATACTTATTTGCCTAAAGACACACTAATGAAAGAGTCATCCGTACTTTTAACAAAGCAAAATGAAACAACAATTGATTC
GGCAATGCTAGAAGATGTATTTATGCAACTTATAGAAGAAAAACGATTAGTAGATGATGACGGACATATCGCAATTCCGA
GCTTATTTTATTCTGAATTAAAAAGTAGTCAAAATGTGTATAAACTCATGAGTAATAATGTACGCATTGATACTTTTGAT
CAATCAGATATACAGATGCATATTGGTGAAATTGAAGAGACGCATGGTGTTTCTTATGCTGAGGCCCAAAAAGAAGCGCT
GGAAGCTGCCATGAAAAATAAATTGATGATATTAACTGGTGGTCCAGGAACAGGTAAAACTACAGTTATAAAAGGGATTG
TACATCTTTATGCAACATTACATGGCATTTCTCTAAACTATGATGACTATGGTGATGAGGATTATCCTGTCGTACTTGCA
GCTCCAACTGGGCGAGCTTCTAAACGACTTCATGATGCGACGGGATTAGAAGCTATGACGATACATCGTTTAATAGGTTG
GAATCAAGACACAAAGCCTGAAGATATACTCGATCATGCCATTCATGCCAAATTGATTATCATTGATGAAATGTCAATGG
TCGATACTTGGCTGTTCCATCAATTTATGGCGGCTGTTCCAGAAGATGCGCAAGTCGTATTGGTTGGCGATGAAGACCAG
TTACCATCTGTAGGCCCAGGTCAAGTATTTAGGGATTTAATTACCTCTAAAGCGTTGCCACGAATTAATTTAATAGAGGT
TTACCGTCAACAAGATGGGTCCAGTATCATTGAATTGGCACACAAAATGAAAGCGGGGTTAAACGTAGATATTACAGAAC
GTTTCCATGATCGCTCTTTCATTCCATGTCATATTGATCAAATTCCTGAAGTCGTACGTAAAGTGGTAACGAATGCCGTT
AAAAAAGGATATGACATGTCTGATATACAAGTACTTGCGCCCATGTATCGTGGCAATGCGGGCATTCATAAACTAAATAA
AGTGCTTCAAGATATTCTTAATCCTATTGAAGATGACGATACACGTGAAATTCAATTTGGAGATGTCGTATATCGGAAAG
GGGATAAAGTACTTCAACTCGTTAATCGACCGAATGATAATATTTTTAATGGTGATATCGGCGTTATCGTTGGCATTTTT
TGGGCTAAAGAGAATGCCCTTAATAAAGACGTTGTAATTGTGGATTATGAAGGCAATGAGATCACATATTTAAAATCAGA
TTTAACGGAATTGACACATGCATATTGTACCTCTATCCATAAAGCGCAAGGATCTGAGTTCCCAATTGTTATTATGCCAA
TCGTTAAACAATATTTTAGAATGCTCCAAAAACCAATCCTTTATACAGGACTAACACGAGCAAAACAATCACTTGTGTTT
TTAGGTGACGCAGATGCATTTAATATAGGAATAAAAACGGAAGGGCAAGTAAGATTAACACGTCAACAAATGTTTCTCGA
GCAATACTTCAACACGGATTCAGAAACAAATCAACCTGTGCAACTTAGTGAAGAGACGATGTTTAAAATAGATCCAATGA
TTAATATGAAAAATGTAACCCCCTATGACTTTATGGAAATTGACAATGTTTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• AAA domain (AAA_30) (339-544)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-720)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.631	100	0.508