Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RU53_RS08875 Genome accession   NZ_CP010526
Coordinates   1772719..1773993 (+) Length   424 a.a.
NCBI ID   WP_000102728.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ST772-MRSA-V strain DAR4145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1767719..1778993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RU53_RS08845 (RU53_1719) mnmA 1767921..1769039 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  RU53_RS08850 (RU53_1720) - 1769040..1770182 (-) 1143 WP_000409157.1 cysteine desulfurase family protein -
  RU53_RS08855 (RU53_1721) - 1770494..1771507 (+) 1014 WP_000985878.1 LLM class flavin-dependent oxidoreductase -
  RU53_RS15355 (RU53_1722) - 1771744..1771890 (-) 147 WP_000009238.1 SAS049 family protein -
  RU53_RS08865 (RU53_1723) - 1771930..1772112 (-) 183 WP_000752909.1 CsbD family protein -
  RU53_RS08870 (RU53_1724) cymR 1772212..1772634 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  RU53_RS08875 (RU53_1725) rarA 1772719..1773993 (+) 1275 WP_000102728.1 replication-associated recombination protein A Machinery gene
  RU53_RS08880 (RU53_1726) - 1774154..1774927 (-) 774 WP_000682646.1 ThiF family adenylyltransferase -
  RU53_RS15360 - 1774927..1775055 (-) 129 WP_001790559.1 hypothetical protein -
  RU53_RS08890 (RU53_1728) aspS 1775388..1777154 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  RU53_RS08895 (RU53_1729) hisS 1777170..1778432 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47222.84 Da        Isoelectric Point: 8.6773

>NTDB_id=124007 RU53_RS08875 WP_000102728.1 1772719..1773993(+) (rarA) [Staphylococcus aureus subsp. aureus ST772-MRSA-V strain DAR4145]
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYKGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=124007 RU53_RS08875 WP_000102728.1 1772719..1773993(+) (rarA) [Staphylococcus aureus subsp. aureus ST772-MRSA-V strain DAR4145]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAAAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTGTTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATTGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGTCAAATTCCAAATCATTTAAAAGATGGACATTATAAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686

Multiple sequence alignment