Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   SXYLSMQ121_RS06065 Genome accession   NZ_CP008724
Coordinates   1295725..1298112 (+) Length   795 a.a.
NCBI ID   WP_042362574.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain SMQ-121     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1290725..1303112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYLSMQ121_RS06045 (SXYLSMQ121_1173) sal 1290970..1292601 (+) 1632 WP_080706846.1 Sal family ABC-F type ribosomal protection protein -
  SXYLSMQ121_RS06050 (SXYLSMQ121_1174) - 1292662..1293807 (+) 1146 WP_042362571.1 cysteine desulfurase family protein -
  SXYLSMQ121_RS06055 (SXYLSMQ121_1175) mnmA 1293808..1294920 (+) 1113 WP_042362572.1 tRNA 2-thiouridine(34) synthase MnmA -
  SXYLSMQ121_RS06060 (SXYLSMQ121_1176) - 1295053..1295721 (+) 669 WP_042362573.1 tetratricopeptide repeat protein -
  SXYLSMQ121_RS06065 (SXYLSMQ121_1177) recD2 1295725..1298112 (+) 2388 WP_042362574.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SXYLSMQ121_RS06070 (SXYLSMQ121_1178) alaS 1298461..1301091 (+) 2631 WP_042362575.1 alanine--tRNA ligase -
  SXYLSMQ121_RS06075 (SXYLSMQ121_1179) - 1301160..1301420 (+) 261 WP_029377131.1 IreB family regulatory phosphoprotein -
  SXYLSMQ121_RS06080 (SXYLSMQ121_1180) ruvX 1301424..1301852 (+) 429 WP_042362576.1 Holliday junction resolvase RuvX -
  SXYLSMQ121_RS06085 (SXYLSMQ121_1181) - 1301869..1302201 (+) 333 WP_029377133.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89573.15 Da        Isoelectric Point: 4.5324

>NTDB_id=123883 SXYLSMQ121_RS06065 WP_042362574.1 1295725..1298112(+) (recD2) [Staphylococcus xylosus strain SMQ-121]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVEKKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGEIEERNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGETIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLKDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCAFLKAYFNNEEETETADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=123883 SXYLSMQ121_RS06065 WP_042362574.1 1295725..1298112(+) (recD2) [Staphylococcus xylosus strain SMQ-121]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGATGCGATTTTGTTTCAAAACAAAGAGAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAATGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTCCCAG
ATATTGCAGAAGGTGACGTCTATACATTTAAAGGCCAAGTAGTTACGCATGCAAAATATGGCAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGATCTTTTTAAAGGAATAGGTAA
AAAAACAGCTCAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTATATTAGAAA
AAGTACCTAGTTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATCGCAAGTAATCAAGAAACGGAACAAATTATC
ATTCGCCTCCATGATCTAGGTTTTGGGCCAAAGTTAGCAATGGCTATATACCAAGCATATTTAGGAGAAACACTTAACGT
AGTTGAAAAGAAACCTTATCAACTTGTATATGATGTCAAAGGCATCGGTTTTAATAAGGCAGACACATTAGCGCGTAATG
TCGGCATTCAATTTAACGATGCAGAACGTCTTAAAGCAGGGTTACTTTATGTGTTAGAAGAAGAATGTATAAAACAAGGT
CATACGTATTTACCTACGAATAATGTACTAGAGATGACTCAAGATATGCTATCACAACCACCAGGTGAATTAATAGAAAC
ACAGCAGTTGGAGCAAGTTTTACAAGATTTAGTTAATGACACTAAATTAATTCAACAAGAAAATGAAGTTGCGATTCCAA
GTCTATACTATTCAGAATTGAAAAGCGTTCAAAATTTATACCGTAATTTTTCTTATACAAATAAACTAAAAGAAATTGAG
CAATCTGATTTGCTGCTTGAAATAGGAGAAATTGAGGAACGCAATAAAGTGACATATGCAGATTCTCAAAGAGAAGCCTT
GCAAACAGCGATTAACTCTAAAATAATGTTACTGACTGGTGGCCCAGGTACAGGAAAAACAACTGTCATTAAAGGAATTG
TTGAACTTTATGCAGAGTTGCATGGTCTATCATTAGATTATGACGATTATCAAAATGATGATTATCCAGTAGTTCTAGGT
GCGCCAACTGGACGTGCATCGAAGCGTTTGTCAGAGTCAACTGGTTTAGAGGCTATGACGATACATCGCTTAATAGGTTG
GAATCAAGATACACAACCAGAAGATATTTTAGATAATGAAATTTCTGCAAAACTTATTATTATTGATGAAATGTCTATGG
TTGATACATGGTTATTCCATCAATTTTTGAGTGCTGTACCTATTGATGCGCAAGTTATACTAGTCGGTGATGAAGATCAG
CTGCCATCTGTTGGACCAGGCCAAGTATTTAAAGATTTAATTGATTCGAAAGTAATTCCTCGTGTAAATTTAACTGAAGT
TTACCGACAACAAGATGGTTCAAGTATTATTGAATTAGCGCATAGGATGAAACTAGGAGAAACTATTGATATTACACAGA
GATTTCATGACCGTAATTTTATAAACTGTACAACAGAACAGATACCTTCAGTTGTTGAAAAAGTGGTGTCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGATCTGCAGGTATTAAGAAACTAAATAC
AGTATTGAAAGATATCTTGAATCCCAAAGAACAAGATACTAGAGAAATTGAGTTTGGTGATATTGTCTTTAGAAAAGGTG
ATAAGGTATTACAACTAGTTAACCGACCAAGCGATAATATATTTAATGGTGATATCGGGGTCATTGTAGGCATCTTCTGG
GCTAAAGAAAATGCATTAAACAAAGATGTATTGGTAGTTGATTTTGAAGGTAATGAGATTACATTTGTTCGTCAAGACTT
AATGGAGTTGACGCATGCCTATTGTACTTCAATCCATAAGTCACAAGGATCAGAATTTCCGATTGTGATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATTTTATATACAGGTTTAACACGTGCTAAACAGTCACTTGTGTTCTTA
GGAGATCCACAAGCATTTGATATTGGTCTAAAGACTCACGGCCAAGTGAGAATGACACAATTGTGTGCTTTTCTTAAAGC
GTATTTTAATAATGAGGAAGAAACTGAAACTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTATCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGTGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50

99.874

0.499

Multiple sequence alignment