Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   BSUB_RS13400 Genome accession   NZ_CP008698
Coordinates   2529278..2529661 (-) Length   127 a.a.
NCBI ID   WP_003230168.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. AG1839     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2524278..2534661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSUB_RS13360 (BSUB_02635) sinI 2525212..2525385 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  BSUB_RS13365 (BSUB_02636) sinR 2525419..2525754 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  BSUB_RS13370 (BSUB_02637) tasA 2525847..2526632 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  BSUB_RS13375 (BSUB_02638) sipW 2526696..2527268 (-) 573 WP_003246088.1 signal peptidase I SipW -
  BSUB_RS13380 (BSUB_02639) tapA 2527252..2528013 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  BSUB_RS13385 (BSUB_02640) yqzG 2528285..2528611 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  BSUB_RS13390 (BSUB_02641) spoIITA 2528653..2528832 (-) 180 WP_003230176.1 YqzE family protein -
  BSUB_RS13395 (BSUB_02642) comGG 2528903..2529277 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  BSUB_RS13400 (BSUB_02643) comGF 2529278..2529661 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  BSUB_RS13405 (BSUB_02644) comGE 2529687..2530034 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  BSUB_RS13410 (BSUB_02645) comGD 2530018..2530449 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  BSUB_RS13415 (BSUB_02646) comGC 2530439..2530735 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  BSUB_RS13420 (BSUB_02647) comGB 2530749..2531786 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  BSUB_RS13425 (BSUB_02648) comGA 2531773..2532843 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  BSUB_RS13435 (BSUB_02650) corA 2533255..2534208 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14281.37 Da        Isoelectric Point: 5.8929

>NTDB_id=123710 BSUB_RS13400 WP_003230168.1 2529278..2529661(-) (comGF) [Bacillus subtilis subsp. subtilis str. AG1839]
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=123710 BSUB_RS13400 WP_003230168.1 2529278..2529661(-) (comGF) [Bacillus subtilis subsp. subtilis str. AG1839]
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
GGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAATCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAAGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment