Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC16712_RS04825 Genome accession   NZ_CP007778
Coordinates   946017..946745 (-) Length   242 a.a.
NCBI ID   WP_039641701.1    Uniprot ID   -
Organism   Campylobacter lari RM16712     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 941017..951745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16712_RS04785 (UPTC16712_0949) holA 941685..942650 (+) 966 WP_039641691.1 DNA polymerase III subunit delta -
  UPTC16712_RS04790 (UPTC16712_0950) rpsF 942741..943115 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  UPTC16712_RS04795 (UPTC16712_0951) - 943119..943646 (+) 528 WP_039641693.1 single-stranded DNA-binding protein -
  UPTC16712_RS04800 (UPTC16712_0952) rpsR 943658..943918 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC16712_RS04805 (UPTC16712_0953) - 943970..944611 (+) 642 WP_039641695.1 MarC family protein -
  UPTC16712_RS04810 (UPTC16712_0954) - 944587..945015 (-) 429 WP_039641697.1 hypothetical protein -
  UPTC16712_RS08020 (UPTC16712_0955) - 945012..945740 (-) 729 WP_052241407.1 type II secretion system protein -
  UPTC16712_RS04820 (UPTC16712_0956) - 945724..946020 (-) 297 WP_039641699.1 hypothetical protein -
  UPTC16712_RS04825 (UPTC16712_0957) proC 946017..946745 (-) 729 WP_039641701.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC16712_RS04830 (UPTC16712_0958) fliW 946745..947140 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC16712_RS04835 (UPTC16712_0959) bamD 947317..947973 (+) 657 WP_039618532.1 outer membrane protein assembly factor BamD -
  UPTC16712_RS04840 (UPTC16712_0960) lon 947973..950351 (+) 2379 WP_039641703.1 endopeptidase La -
  UPTC16712_RS08595 (UPTC16712_0961) - 950366..951745 (-) 1380 WP_373274587.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26559.76 Da        Isoelectric Point: 6.7094

>NTDB_id=123325 UPTC16712_RS04825 WP_039641701.1 946017..946745(-) (proC) [Campylobacter lari RM16712]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLVNAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=123325 UPTC16712_RS04825 WP_039641701.1 946017..946745(-) (proC) [Campylobacter lari RM16712]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTGAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGCGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGTAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTACTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.159

98.76

0.574

Multiple sequence alignment