Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC16701_RS04630 Genome accession   NZ_CP007777
Coordinates   906710..907438 (-) Length   242 a.a.
NCBI ID   WP_039618529.1    Uniprot ID   -
Organism   Campylobacter lari RM16701     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 901710..912438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16701_RS04590 (UPTC16701_0918) holA 902378..903343 (+) 966 WP_039618518.1 DNA polymerase III subunit delta -
  UPTC16701_RS04595 (UPTC16701_0919) rpsF 903434..903808 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  UPTC16701_RS04600 (UPTC16701_0920) - 903812..904339 (+) 528 WP_039618520.1 single-stranded DNA-binding protein -
  UPTC16701_RS04605 (UPTC16701_0921) rpsR 904351..904611 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC16701_RS04610 (UPTC16701_0922) - 904663..905304 (+) 642 WP_039618523.1 MarC family protein -
  UPTC16701_RS04615 (UPTC16701_0923) - 905286..905708 (-) 423 WP_039619645.1 hypothetical protein -
  UPTC16701_RS04620 (UPTC16701_0924) - 905705..906433 (-) 729 WP_039618525.1 type II secretion system protein -
  UPTC16701_RS04625 (UPTC16701_0925) - 906417..906713 (-) 297 WP_039618527.1 hypothetical protein -
  UPTC16701_RS04630 (UPTC16701_0926) proC 906710..907438 (-) 729 WP_039618529.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC16701_RS04635 (UPTC16701_0927) fliW 907438..907833 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC16701_RS04640 (UPTC16701_0928) bamD 908010..908666 (+) 657 WP_039618532.1 outer membrane protein assembly factor BamD -
  UPTC16701_RS04645 (UPTC16701_0929) lon 908666..911044 (+) 2379 WP_039618533.1 endopeptidase La -
  UPTC16701_RS08045 (UPTC16701_0930) - 911059..912432 (-) 1374 WP_407712411.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26531.75 Da        Isoelectric Point: 7.1892

>NTDB_id=123308 UPTC16701_RS04630 WP_039618529.1 906710..907438(-) (proC) [Campylobacter lari RM16701]
MSEIYILGNGAMASAIAKGLKGTYKVVIVARDLKKVSSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=123308 UPTC16701_RS04630 WP_039618529.1 906710..907438(-) (proC) [Campylobacter lari RM16701]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTGAAAGGTACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGTTAGTAGCTTAAATTTAGAGGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACGGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGCGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.159

98.76

0.574

Multiple sequence alignment