Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC4110_RS04675 Genome accession   NZ_CP007776
Coordinates   900881..901609 (-) Length   242 a.a.
NCBI ID   WP_039628434.1    Uniprot ID   -
Organism   Campylobacter lari CCUG 22395     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 895881..906609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC4110_RS04635 (UPTC4110_0927) holA 896549..897514 (+) 966 WP_039628426.1 DNA polymerase III subunit delta -
  UPTC4110_RS04640 (UPTC4110_0928) rpsF 897605..897979 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  UPTC4110_RS04645 (UPTC4110_0929) - 897983..898510 (+) 528 WP_039628428.1 single-stranded DNA-binding protein -
  UPTC4110_RS04650 (UPTC4110_0930) rpsR 898522..898782 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC4110_RS04655 (UPTC4110_0931) - 898834..899475 (+) 642 WP_039628430.1 MarC family protein -
  UPTC4110_RS04660 (UPTC4110_0932) - 899457..899879 (-) 423 WP_039629396.1 hypothetical protein -
  UPTC4110_RS04665 (UPTC4110_0933) - 899876..900604 (-) 729 WP_052243388.1 type II secretion system protein -
  UPTC4110_RS04670 (UPTC4110_0934) - 900588..900884 (-) 297 WP_039628432.1 hypothetical protein -
  UPTC4110_RS04675 (UPTC4110_0935) proC 900881..901609 (-) 729 WP_039628434.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC4110_RS04680 (UPTC4110_0936) fliW 901609..902004 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC4110_RS04685 (UPTC4110_0937) bamD 902181..902837 (+) 657 WP_039618532.1 outer membrane protein assembly factor BamD -
  UPTC4110_RS04690 (UPTC4110_0938) lon 902837..905215 (+) 2379 WP_039628436.1 endopeptidase La -
  UPTC4110_RS08065 (UPTC4110_0939) - 905230..906603 (-) 1374 WP_039628438.1 MCP-domain energy taxis signal transduction protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26561.73 Da        Isoelectric Point: 6.7094

>NTDB_id=123292 UPTC4110_RS04675 WP_039628434.1 900881..901609(-) (proC) [Campylobacter lari CCUG 22395]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCVNAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGTFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=123292 UPTC4110_RS04675 WP_039628434.1 900881..901609(-) (proC) [Campylobacter lari CCUG 22395]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGTTTGAAAGATACTTATAAAGTAGT
TATTGTTGCTAGAGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAGGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTGTTAATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGGTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
CGCTTGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATCAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTACTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.577

98.76

0.579

Multiple sequence alignment