Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   UPTC3659_RS05885 Genome accession   NZ_CP007775
Coordinates   1174067..1174795 (-) Length   242 a.a.
NCBI ID   WP_039626419.1    Uniprot ID   -
Organism   Campylobacter lari NCTC 11845     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1169067..1179795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC3659_RS05845 (UPTC3659_1163) holA 1169737..1170702 (+) 966 WP_039626407.1 DNA polymerase III subunit delta -
  UPTC3659_RS05850 (UPTC3659_1164) rpsF 1170794..1171168 (+) 375 WP_039626409.1 30S ribosomal protein S6 -
  UPTC3659_RS05855 (UPTC3659_1165) - 1171172..1171699 (+) 528 WP_039626411.1 single-stranded DNA-binding protein -
  UPTC3659_RS05860 (UPTC3659_1166) rpsR 1171711..1171971 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  UPTC3659_RS05865 (UPTC3659_1167) - 1172020..1172661 (+) 642 WP_039626413.1 MarC family protein -
  UPTC3659_RS05870 (UPTC3659_1168) - 1172643..1173065 (-) 423 WP_039626414.1 hypothetical protein -
  UPTC3659_RS09040 (UPTC3659_1169) - 1173062..1173790 (-) 729 WP_052243295.1 type II secretion system protein -
  UPTC3659_RS05880 (UPTC3659_1170) - 1173774..1174070 (-) 297 WP_039626416.1 hypothetical protein -
  UPTC3659_RS05885 (UPTC3659_1171) proC 1174067..1174795 (-) 729 WP_039626419.1 pyrroline-5-carboxylate reductase Machinery gene
  UPTC3659_RS05890 (UPTC3659_1172) fliW 1174795..1175190 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  UPTC3659_RS05895 (UPTC3659_1173) bamD 1175367..1176023 (+) 657 WP_039626420.1 outer membrane protein assembly factor BamD -
  UPTC3659_RS05900 (UPTC3659_1174) lon 1176023..1178401 (+) 2379 WP_039626422.1 endopeptidase La -
  UPTC3659_RS09955 (UPTC3659_1175) - 1178416..1179789 (-) 1374 WP_039626424.1 MCP-domain energy taxis signal transduction protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26590.75 Da        Isoelectric Point: 6.2655

>NTDB_id=123275 UPTC3659_RS05885 WP_039626419.1 1174067..1174795(-) (proC) [Campylobacter lari NCTC 11845]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCIDAQNYIKIMPNTAAEFKASATAYLMENDLYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYEFTRASFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=123275 UPTC3659_RS05885 WP_039626419.1 1174067..1174795(-) (proC) [Campylobacter lari NCTC 11845]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAACAACTTCATTGTATTGATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCATATTTGATGGAAAATGATTTATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGTTGTGCTCCTGCGTTT
TTGGCTTTGGTGGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGTTTACTCG
TGCAAGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.577

98.76

0.579

Multiple sequence alignment