Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CVOL_RS04695 Genome accession   NZ_CP007774
Coordinates   897241..897975 (-) Length   244 a.a.
NCBI ID   WP_039665676.1    Uniprot ID   A0AAE5YGF1
Organism   Campylobacter volucris LMG 24379     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 892241..902975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVOL_RS04655 (CVOL_0926) holA 892931..893896 (+) 966 WP_039665668.1 DNA polymerase III subunit delta -
  CVOL_RS04660 (CVOL_0927) rpsF 893989..894363 (+) 375 WP_039665669.1 30S ribosomal protein S6 -
  CVOL_RS04665 (CVOL_0928) - 894367..894888 (+) 522 WP_039665670.1 single-stranded DNA-binding protein -
  CVOL_RS04670 (CVOL_0929) rpsR 894899..895159 (+) 261 WP_039665671.1 30S ribosomal protein S18 -
  CVOL_RS04675 (CVOL_0930) - 895207..895842 (+) 636 WP_039665672.1 MarC family protein -
  CVOL_RS04680 (CVOL_0931) - 895808..896251 (-) 444 WP_039665673.1 hypothetical protein -
  CVOL_RS04685 (CVOL_0932) - 896248..896967 (-) 720 WP_039665674.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CVOL_RS04690 (CVOL_0933) - 896951..897244 (-) 294 WP_039665675.1 hypothetical protein -
  CVOL_RS04695 (CVOL_0934) proC 897241..897975 (-) 735 WP_039665676.1 pyrroline-5-carboxylate reductase Machinery gene
  CVOL_RS04700 (CVOL_0935) fliW 897975..898373 (-) 399 WP_039665677.1 flagellar assembly protein FliW -
  CVOL_RS04705 (CVOL_0936) - 898548..899204 (+) 657 WP_039665678.1 outer membrane protein assembly factor BamD -
  CVOL_RS04710 (CVOL_0937) lon 899204..901582 (+) 2379 WP_039665679.1 endopeptidase La -
  CVOL_RS08400 - 901597..902274 (-) 678 Protein_918 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26856.33 Da        Isoelectric Point: 8.8840

>NTDB_id=123256 CVOL_RS04695 WP_039665676.1 897241..897975(-) (proC) [Campylobacter volucris LMG 24379]
MSEIYILGNGAMANAIALGLEDKYEITIVARDESKNIISKPNIKTISYKEFNLEGKNVILAFKPFALNDVAKMLKGEARW
VVSVLANTTFEQLHVIKAQDYIKIMPNIAAKFKSSTTAYLMEKSLFKDEILQVLNTFGKSFLLQNEKEFDIAMVLSGCAP
AFLALVAEALANAGVRGGLKNDLSYNLTKATFESFSALFNQEHPALIKEKICSPAGVTIKGIEALEKRALRAAFFEAFLA
SSQK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=123256 CVOL_RS04695 WP_039665676.1 897241..897975(-) (proC) [Campylobacter volucris LMG 24379]
ATGTCTGAAATTTATATTTTAGGAAATGGAGCTATGGCAAATGCTATAGCATTGGGGTTAGAAGATAAATATGAAATTAC
AATTGTCGCTAGAGATGAAAGTAAAAATATAATATCTAAACCAAACATTAAAACAATTTCCTATAAAGAATTTAATTTAG
AAGGTAAAAATGTAATTTTAGCTTTTAAACCTTTTGCGTTAAATGATGTTGCAAAAATGTTAAAAGGTGAGGCAAGATGG
GTTGTTTCTGTTTTGGCAAATACTACTTTTGAACAACTTCATGTCATAAAAGCACAAGATTATATAAAAATAATGCCTAA
TATTGCTGCGAAATTTAAATCTTCCACAACTGCGTATTTAATGGAAAAATCTTTATTTAAAGATGAAATCTTGCAAGTGC
TTAATACTTTTGGTAAATCTTTTTTGCTTCAAAATGAAAAAGAATTTGATATTGCTATGGTTTTAAGTGGTTGTGCTCCT
GCTTTTTTAGCTTTGGTAGCAGAAGCTTTAGCTAATGCTGGAGTAAGAGGTGGATTGAAAAATGATTTAAGTTATAATCT
AACCAAGGCTACTTTTGAAAGCTTTAGTGCCTTGTTTAATCAAGAGCATCCAGCCTTGATAAAAGAAAAAATTTGCTCTC
CAGCAGGAGTAACTATAAAAGGAATCGAAGCTTTGGAAAAAAGAGCTTTAAGGGCTGCATTTTTTGAAGCTTTTTTAGCT
AGTTCTCAAAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-86)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(146-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.678

99.18

0.582

Multiple sequence alignment