Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RC03_RS06760 Genome accession   NZ_CP010496
Coordinates   1281130..1282137 (+) Length   335 a.a.
NCBI ID   WP_002932887.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1276130..1287137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC03_RS09385 - 1277783..1280064 (-) 2282 Protein_1329 autotransporter outer membrane beta-barrel domain-containing protein -
  RC03_RS06755 (RC03_06750) - 1280629..1281039 (-) 411 WP_002783915.1 hypothetical protein -
  RC03_RS06760 (RC03_06755) ruvB 1281130..1282137 (+) 1008 WP_002932887.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RC03_RS06765 (RC03_06760) amaA 1282141..1283184 (+) 1044 WP_002853922.1 AI-2E family transporter -
  RC03_RS06770 (RC03_06765) fumC 1283214..1284605 (-) 1392 WP_002932890.1 class II fumarate hydratase -
  RC03_RS06775 (RC03_06770) glmS 1284739..1286535 (-) 1797 WP_002932892.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37341.87 Da        Isoelectric Point: 4.9081

>NTDB_id=123239 RC03_RS06760 WP_002932887.1 1281130..1282137(+) (ruvB) [Campylobacter jejuni strain CJ677CC032]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFITAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=123239 RC03_RS06760 WP_002932887.1 1281130..1282137(+) (ruvB) [Campylobacter jejuni strain CJ677CC032]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGACGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATGTCTTTATAACTGCAGCCAAAAAACGCAACGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCAGCCATTTTAACCAATCTTAGCGAAGGGGATATACT
TTTTATCGATGAAATTCACCGCTTAAGCCCTGCTATCGAAGAAGTACTTTACCCTGCGATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACTATAAAAATCGATTTACCAAAATTTACCCTTATAGGAGCTACAACACGC
GCAGGTATGCTTAGCAATCCTTTGCGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
TCTCATCTTGCAAAAAGCAGCTTTAAAGCTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCAAGGATAGCCTTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGGGCTAATGAGGCCTTAAATTCTTTAGGGGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCTAAGCAAAAACCTATAGGACTTGCAAGCATTGCTGCGGCTTTAAGCGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGCACAAAAAGC
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.162

99.701

0.69
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.067

97.313

0.516
  ruvB Synechocystis sp. PCC 6803

49.533

95.821

0.475
  ruvB Streptococcus pneumoniae TIGR4

48.024

98.209

0.472
  ruvB Streptococcus pneumoniae R6

48.024

98.209

0.472
  ruvB Streptococcus pneumoniae D39

48.024

98.209

0.472

Multiple sequence alignment