Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CSUB8523_RS06180 Genome accession   NZ_CP007773
Coordinates   1189630..1190358 (-) Length   242 a.a.
NCBI ID   WP_039664159.1    Uniprot ID   -
Organism   Campylobacter subantarcticus LMG 24377     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1184630..1195358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUB8523_RS06140 (CSUB8523_1222) holA 1185298..1186263 (+) 966 WP_039664151.1 DNA polymerase III subunit delta -
  CSUB8523_RS06145 (CSUB8523_1223) rpsF 1186354..1186728 (+) 375 WP_043019932.1 30S ribosomal protein S6 -
  CSUB8523_RS06150 (CSUB8523_1224) - 1186732..1187259 (+) 528 WP_039664153.1 single-stranded DNA-binding protein -
  CSUB8523_RS06155 (CSUB8523_1225) rpsR 1187271..1187531 (+) 261 WP_039664154.1 30S ribosomal protein S18 -
  CSUB8523_RS06160 (CSUB8523_1226) - 1187583..1188224 (+) 642 WP_043019933.1 MarC family protein -
  CSUB8523_RS06165 (CSUB8523_1227) - 1188200..1188628 (-) 429 WP_043019934.1 hypothetical protein -
  CSUB8523_RS06170 (CSUB8523_1228) - 1188625..1189353 (-) 729 WP_043019935.1 hypothetical protein -
  CSUB8523_RS06175 (CSUB8523_1229) - 1189337..1189633 (-) 297 WP_043019936.1 hypothetical protein -
  CSUB8523_RS06180 (CSUB8523_1230) proC 1189630..1190358 (-) 729 WP_039664159.1 pyrroline-5-carboxylate reductase Machinery gene
  CSUB8523_RS06185 (CSUB8523_1231) fliW 1190358..1190753 (-) 396 WP_039664160.1 flagellar assembly protein FliW -
  CSUB8523_RS06190 (CSUB8523_1232) - 1190930..1191586 (+) 657 WP_039664161.1 outer membrane protein assembly factor BamD -
  CSUB8523_RS06195 (CSUB8523_1233) lon 1191586..1193964 (+) 2379 WP_039664162.1 endopeptidase La -
  CSUB8523_RS10575 (CSUB8523_1234) - 1193976..1195355 (-) 1380 WP_039664163.1 MCP-domain energy taxis signal transduction protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26450.82 Da        Isoelectric Point: 7.6877

>NTDB_id=123239 CSUB8523_RS06180 WP_039664159.1 1189630..1190358(-) (proC) [Campylobacter subantarcticus LMG 24377]
MSEIYILGNGAMASAIAKGISGAYEVIVVARDLKKASSLNFKVISYDEFDMENKNIILAFKPYALEDVVVKLKGKARWLI
SVLAKTTFEQLHCIDAQNYIKIMPNTAAEFKASATAYLMENDLYKNEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALIAESLANAGVKNGLKNELSYELTRACFESFSALFNHAHPAIIKEKICSPAGVTIKGVEVLEKKALRGAFFEAFSASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=123239 CSUB8523_RS06180 WP_039664159.1 1189630..1190358(-) (proC) [Campylobacter subantarcticus LMG 24377]
ATGTCCGAAATTTATATTTTAGGAAATGGTGCTATGGCTAGTGCTATAGCAAAAGGTATAAGCGGTGCTTATGAAGTGAT
AGTAGTTGCAAGAGATTTAAAAAAAGCAAGTAGCTTAAATTTCAAAGTCATATCATATGATGAGTTTGATATGGAAAATA
AAAATATTATTTTGGCTTTTAAACCTTATGCTTTAGAAGATGTAGTTGTTAAACTAAAAGGCAAGGCAAGATGGCTTATT
TCGGTTTTAGCAAAGACTACTTTTGAGCAACTTCATTGTATTGATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCTTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAAAATGAAATCTTATCATTGTTAAATA
CTTTTGGAAAAGCTATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGTTGTGCCCCTGCATTT
TTAGCTTTGATAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTACGCG
TGCTTGTTTTGAAAGTTTTAGTGCTTTGTTTAATCATGCTCATCCAGCAATTATAAAAGAAAAAATTTGCTCTCCGGCGG
GAGTTACAATTAAAGGAGTTGAAGTTTTGGAAAAAAAGGCTTTGCGTGGTGCTTTTTTTGAAGCTTTTAGCGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.159

98.76

0.574

Multiple sequence alignment