Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CSUB8521_RS05635 Genome accession   NZ_CP007772
Coordinates   1108040..1108768 (-) Length   242 a.a.
NCBI ID   WP_039664159.1    Uniprot ID   -
Organism   Campylobacter subantarcticus LMG 24374     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1103040..1113768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUB8521_RS05595 (CSUB8521_1116) holA 1103708..1104673 (+) 966 WP_039664151.1 DNA polymerase III subunit delta -
  CSUB8521_RS05600 (CSUB8521_1117) rpsF 1104764..1105138 (+) 375 WP_039664152.1 30S ribosomal protein S6 -
  CSUB8521_RS05605 (CSUB8521_1118) - 1105142..1105669 (+) 528 WP_039664153.1 single-stranded DNA-binding protein -
  CSUB8521_RS05610 (CSUB8521_1119) rpsR 1105681..1105941 (+) 261 WP_039664154.1 30S ribosomal protein S18 -
  CSUB8521_RS05615 (CSUB8521_1120) - 1105993..1106634 (+) 642 WP_039664155.1 MarC family protein -
  CSUB8521_RS05620 (CSUB8521_1121) - 1106610..1107038 (-) 429 WP_039664156.1 hypothetical protein -
  CSUB8521_RS05625 (CSUB8521_1122) - 1107035..1107763 (-) 729 WP_039664157.1 hypothetical protein -
  CSUB8521_RS05630 (CSUB8521_1123) - 1107747..1108043 (-) 297 WP_039664158.1 hypothetical protein -
  CSUB8521_RS05635 (CSUB8521_1124) proC 1108040..1108768 (-) 729 WP_039664159.1 pyrroline-5-carboxylate reductase Machinery gene
  CSUB8521_RS05640 (CSUB8521_1125) fliW 1108768..1109163 (-) 396 WP_039664160.1 flagellar assembly protein FliW -
  CSUB8521_RS05645 (CSUB8521_1126) - 1109340..1109996 (+) 657 WP_039664161.1 outer membrane protein assembly factor BamD -
  CSUB8521_RS05650 (CSUB8521_1127) lon 1109996..1112374 (+) 2379 WP_039664162.1 endopeptidase La -
  CSUB8521_RS09780 (CSUB8521_1128) - 1112386..1113765 (-) 1380 WP_039664163.1 MCP-domain energy taxis signal transduction protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26450.82 Da        Isoelectric Point: 7.6877

>NTDB_id=123222 CSUB8521_RS05635 WP_039664159.1 1108040..1108768(-) (proC) [Campylobacter subantarcticus LMG 24374]
MSEIYILGNGAMASAIAKGISGAYEVIVVARDLKKASSLNFKVISYDEFDMENKNIILAFKPYALEDVVVKLKGKARWLI
SVLAKTTFEQLHCIDAQNYIKIMPNTAAEFKASATAYLMENDLYKNEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALIAESLANAGVKNGLKNELSYELTRACFESFSALFNHAHPAIIKEKICSPAGVTIKGVEVLEKKALRGAFFEAFSASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=123222 CSUB8521_RS05635 WP_039664159.1 1108040..1108768(-) (proC) [Campylobacter subantarcticus LMG 24374]
ATGTCCGAAATTTATATTTTAGGAAATGGTGCTATGGCTAGTGCTATAGCAAAAGGTATAAGCGGTGCTTATGAAGTGAT
AGTAGTTGCAAGAGATTTAAAAAAAGCAAGTAGCTTAAATTTCAAAGTCATATCATATGATGAGTTTGATATGGAAAATA
AAAATATTATTTTGGCTTTTAAACCTTATGCTTTAGAAGATGTAGTTGTTAAACTAAAAGGCAAGGCAAGATGGCTTATT
TCGGTTTTAGCAAAGACTACTTTTGAGCAACTTCATTGTATTGATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCTTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAAAATGAAATCTTATCATTGTTAAATA
CTTTTGGAAAAGCTATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGTTGTGCCCCTGCATTT
TTAGCTTTGATAGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTACGCG
TGCTTGTTTTGAAAGTTTTAGTGCTTTGTTTAATCATGCTCATCCAGCAATTATAAAAGAAAAAATTTGCTCTCCAGCAG
GAGTTACAATTAAAGGAGTTGAAGTTTTGGAAAAAAAGGCTTTGCGTGGTGCTTTTTTTGAAGCTTTTAGCGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.159

98.76

0.574

Multiple sequence alignment