Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CAQ16704_RS04750 Genome accession   NZ_CP007769
Coordinates   916490..917218 (-) Length   242 a.a.
NCBI ID   WP_039667113.1    Uniprot ID   -
Organism   Campylobacter sp. RM16704     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 911490..922218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAQ16704_RS04710 (CAQ16704_0939) - 912154..913119 (+) 966 WP_039667106.1 DNA polymerase III subunit delta -
  CAQ16704_RS04715 (CAQ16704_0940) rpsF 913205..913579 (+) 375 WP_039667107.1 30S ribosomal protein S6 -
  CAQ16704_RS04720 (CAQ16704_0941) - 913581..914108 (+) 528 WP_039667108.1 single-stranded DNA-binding protein -
  CAQ16704_RS04725 (CAQ16704_0942) rpsR 914120..914380 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  CAQ16704_RS04730 (CAQ16704_0943) - 914440..915081 (+) 642 WP_039667109.1 MarC family protein -
  CAQ16704_RS04735 (CAQ16704_0944) - 915057..915485 (-) 429 WP_039667110.1 hypothetical protein -
  CAQ16704_RS04740 (CAQ16704_0945) - 915482..916213 (-) 732 WP_039667111.1 hypothetical protein -
  CAQ16704_RS04745 (CAQ16704_0946) - 916197..916493 (-) 297 WP_039667112.1 hypothetical protein -
  CAQ16704_RS04750 (CAQ16704_0947) proC 916490..917218 (-) 729 WP_039667113.1 pyrroline-5-carboxylate reductase Machinery gene
  CAQ16704_RS04755 (CAQ16704_0948) fliW 917218..917613 (-) 396 WP_039667114.1 flagellar assembly protein FliW -
  CAQ16704_RS04760 (CAQ16704_0949) bamD 917790..918443 (+) 654 WP_039667115.1 outer membrane protein assembly factor BamD -
  CAQ16704_RS04765 (CAQ16704_0950) lon 918443..920821 (+) 2379 WP_039667116.1 endopeptidase La -
  CAQ16704_RS08540 (CAQ16704_0951) - 920837..922210 (-) 1374 WP_039667117.1 MCP-domain energy taxis signal transduction protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26724.19 Da        Isoelectric Point: 9.2316

>NTDB_id=123170 CAQ16704_RS04750 WP_039667113.1 916490..917218(-) (proC) [Campylobacter sp. RM16704]
MSEIYILGNGAMASAIAKGLQDDYNVIIVARDIKKTNHLNLKVVSYDNFDLKDKNIILAFKPYALNEVANKLKGKAKFII
SVLANTTFEQLHCIKAQNYAKIMPNIAAEFKASTTPYLMEKKIFENEILSIINTFGKSFLLQNEKEFDIAMILSGCAPAF
LAMVAESLANAGVRNGLKNDLSYDLAKATFESFSTLFAHTHPAIIKEKICSPAGITIKGVEALEKRALRGAFFEAFEASV
RK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=123170 CAQ16704_RS04750 WP_039667113.1 916490..917218(-) (proC) [Campylobacter sp. RM16704]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCTAGTGCTATAGCAAAAGGTTTGCAAGATGATTATAATGTTAT
TATAGTAGCTAGAGATATAAAAAAAACCAACCACTTGAATTTAAAAGTCGTATCTTATGATAATTTTGATTTAAAAGATA
AAAATATTATTTTAGCTTTTAAGCCTTATGCGTTAAATGAAGTAGCTAATAAATTAAAAGGTAAAGCTAAATTTATTATT
TCTGTTTTAGCAAATACTACTTTTGAACAATTACATTGTATTAAAGCACAAAATTATGCAAAAATTATGCCAAATATAGC
TGCAGAATTTAAAGCTTCTACAACCCCTTATTTGATGGAAAAAAAAATATTTGAAAATGAAATTTTATCAATTATAAATA
CTTTTGGTAAGTCTTTTTTGCTTCAAAATGAAAAAGAATTTGATATTGCTATGATTTTAAGTGGTTGTGCTCCAGCGTTT
TTAGCTATGGTAGCAGAAAGTTTAGCAAATGCAGGTGTTAGAAATGGACTTAAAAATGATTTAAGCTATGATTTAGCAAA
AGCAACATTTGAAAGTTTTTCAACATTATTTGCTCATACACATCCTGCAATTATTAAAGAAAAAATATGTTCTCCTGCTG
GAATTACTATAAAAGGAGTTGAGGCTTTGGAAAAAAGGGCTTTACGAGGTGCTTTTTTTGAAGCTTTTGAAGCAAGTGTA
AGAAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

55.785

100

0.558

Multiple sequence alignment