Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CPEL_RS05360 Genome accession   NZ_CP007766
Coordinates   1088752..1089480 (-) Length   242 a.a.
NCBI ID   WP_044598908.1    Uniprot ID   -
Organism   Campylobacter peloridis LMG 23910     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1083752..1094480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPEL_RS05320 (CPEL_1052) holA 1084425..1085390 (+) 966 WP_044598901.1 DNA polymerase III subunit delta -
  CPEL_RS05325 (CPEL_1053) rpsF 1085481..1085855 (+) 375 WP_044598902.1 30S ribosomal protein S6 -
  CPEL_RS05330 (CPEL_1054) - 1085858..1086385 (+) 528 WP_044598903.1 single-stranded DNA-binding protein -
  CPEL_RS05335 (CPEL_1055) rpsR 1086397..1086657 (+) 261 WP_039665671.1 30S ribosomal protein S18 -
  CPEL_RS05340 (CPEL_1056) - 1086705..1087346 (+) 642 WP_044598904.1 MarC family protein -
  CPEL_RS05345 (CPEL_1057) - 1087328..1087750 (-) 423 WP_044598905.1 hypothetical protein -
  CPEL_RS05350 (CPEL_1058) - 1087747..1088475 (-) 729 WP_044598906.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CPEL_RS05355 (CPEL_1059) - 1088459..1088755 (-) 297 WP_044598907.1 hypothetical protein -
  CPEL_RS05360 (CPEL_1060) proC 1088752..1089480 (-) 729 WP_044598908.1 pyrroline-5-carboxylate reductase Machinery gene
  CPEL_RS05365 (CPEL_1061) fliW 1089473..1089877 (-) 405 WP_044598909.1 flagellar assembly protein FliW -
  CPEL_RS05370 (CPEL_1062) - 1090063..1090719 (+) 657 WP_044598910.1 outer membrane protein assembly factor BamD -
  CPEL_RS05375 (CPEL_1063) lon 1090719..1093103 (+) 2385 WP_044598911.1 endopeptidase La -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26573.84 Da        Isoelectric Point: 8.2153

>NTDB_id=123152 CPEL_RS05360 WP_044598908.1 1088752..1089480(-) (proC) [Campylobacter peloridis LMG 23910]
MNKIYILGNGAMASAIAKGLEDSYEIIVVARNPKKVTNINAKIISYDNFDLEGKNILLAFKPYALDEVANLLKGKARWLI
SVLANTTFEQLYCIKSQNYIKIMPNIAAEFKASTTGYLIENDLYKDEVISVLNTFGKSFLLQNEKEFNVAMVLSGCAPAF
LSLVAEALSNAGLKNGLKNDLSYQLTRSTFESFSALLNHEHPAIIKEKICSPAGVTIKGVEALEKKALRGAFFEAFEASL
GK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=123152 CPEL_RS05360 WP_044598908.1 1088752..1089480(-) (proC) [Campylobacter peloridis LMG 23910]
ATGAATAAAATTTATATTTTAGGAAATGGTGCTATGGCAAGTGCTATAGCTAAAGGACTTGAAGATAGTTATGAAATTAT
TGTTGTAGCTAGAAATCCAAAGAAAGTTACAAATATTAATGCCAAAATAATATCTTATGATAATTTTGATTTGGAAGGCA
AAAATATTCTTTTGGCTTTTAAACCTTATGCTTTAGATGAAGTTGCTAATTTGCTAAAAGGTAAAGCAAGATGGCTTATT
TCGGTTTTGGCTAATACTACTTTTGAGCAACTTTATTGTATTAAATCACAAAATTATATAAAAATAATGCCAAATATTGC
TGCTGAATTTAAAGCTTCTACGACTGGTTATTTAATAGAGAATGATTTATATAAAGATGAAGTTATATCGGTGTTAAATA
CTTTTGGGAAATCATTTTTACTACAAAATGAAAAAGAATTTAATGTAGCTATGGTTTTAAGTGGTTGTGCACCTGCTTTT
TTATCTTTGGTTGCAGAAGCTCTTTCAAATGCTGGATTAAAAAATGGATTAAAAAATGATTTGAGTTATCAGTTAACTAG
ATCTACTTTTGAAAGTTTTAGTGCTTTATTAAACCACGAGCATCCTGCTATCATAAAAGAGAAAATTTGTTCTCCAGCAG
GAGTTACCATAAAAGGAGTAGAAGCTTTAGAAAAGAAAGCTTTGCGTGGTGCATTTTTTGAAGCTTTTGAGGCAAGTTTA
GGTAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-240)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(3-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

56.198

100

0.562

Multiple sequence alignment