Detailed information
Bioinformatically predicted
Overview
| Name | ctsD | Type | Machinery gene |
| Locus tag | CPEL_RS02010 | Genome accession | NZ_CP007766 |
| Coordinates | 407064..408455 (+) | Length | 463 a.a. |
| NCBI ID | WP_044598406.1 | Uniprot ID | - |
| Organism | Campylobacter peloridis LMG 23910 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 402064..413455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPEL_RS01995 (CPEL_0397) | - | 402448..403092 (+) | 645 | WP_044598403.1 | HAD family hydrolase | - |
| CPEL_RS02000 (CPEL_0398) | nifJ | 403208..406762 (+) | 3555 | WP_044598404.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| CPEL_RS02005 (CPEL_0399) | - | 406793..407095 (+) | 303 | WP_148308764.1 | hypothetical protein | - |
| CPEL_RS02010 (CPEL_0400) | ctsD | 407064..408455 (+) | 1392 | WP_044598406.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| CPEL_RS02015 (CPEL_0401) | - | 408436..408774 (+) | 339 | WP_049984562.1 | transformation system, membrane protein CtsX | - |
| CPEL_RS02020 (CPEL_0402) | - | 408758..410320 (+) | 1563 | WP_044598407.1 | transformation system, type II secretion system ATPase CtsE | - |
| CPEL_RS02025 (CPEL_0403) | - | 410317..411477 (+) | 1161 | WP_044598408.1 | transformation system, type II secretion system membrane protein CtsF | - |
| CPEL_RS02030 (CPEL_0404) | - | 411474..412226 (-) | 753 | WP_044598409.1 | TSUP family transporter | - |
| CPEL_RS02035 (CPEL_0405) | - | 412211..412960 (-) | 750 | WP_044598410.1 | TIGR02757 family protein | - |
Sequence
Protein
Download Length: 463 a.a. Molecular weight: 52420.41 Da Isoelectric Point: 8.2135
>NTDB_id=123147 CPEL_RS02010 WP_044598406.1 407064..408455(+) (ctsD) [Campylobacter peloridis LMG 23910]
MKKIIILLFISVCFANGALKCSQRTFDISVETKSSLLEVLNELGRECRFSIIIKDDLAKNKLNNQQNYIHISKMTLREIF
DLLLKENNLAYEYEKNVLKIYGKLVKTFKVHYISSIREGQSITKASVDSRPRQGDLDIFGKDADNLVVSTDKFNFWEKIA
EEIQALLDDDSTKPIINTNAGIITLNATPYEITRVQNYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNA
DDKEFILNKGGIKNINLKSNIEIKAILNLLQENGKTSVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVEDGQTLILGGLISKN
SVNNQNEISALSKIPLFGLLFQGKQNIEDVSEIVFIIKPVIVKEDKKILNLKELGFDHEDYMF
MKKIIILLFISVCFANGALKCSQRTFDISVETKSSLLEVLNELGRECRFSIIIKDDLAKNKLNNQQNYIHISKMTLREIF
DLLLKENNLAYEYEKNVLKIYGKLVKTFKVHYISSIREGQSITKASVDSRPRQGDLDIFGKDADNLVVSTDKFNFWEKIA
EEIQALLDDDSTKPIINTNAGIITLNATPYEITRVQNYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNA
DDKEFILNKGGIKNINLKSNIEIKAILNLLQENGKTSVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVEDGQTLILGGLISKN
SVNNQNEISALSKIPLFGLLFQGKQNIEDVSEIVFIIKPVIVKEDKKILNLKELGFDHEDYMF
Nucleotide
Download Length: 1392 bp
>NTDB_id=123147 CPEL_RS02010 WP_044598406.1 407064..408455(+) (ctsD) [Campylobacter peloridis LMG 23910]
ATGAAAAAAATAATAATATTGTTATTTATTAGCGTATGTTTTGCTAATGGGGCTTTAAAATGCTCTCAAAGAACATTTGA
TATAAGTGTTGAAACAAAAAGTTCTTTGCTTGAGGTTTTAAATGAATTAGGTAGAGAGTGTAGATTTAGTATTATCATTA
AAGATGATTTAGCTAAAAATAAACTAAACAACCAACAAAATTATATTCATATTAGTAAAATGACTCTAAGAGAAATTTTT
GATCTTTTGCTAAAGGAGAATAATCTTGCTTATGAATATGAAAAGAATGTTTTAAAAATTTATGGTAAATTAGTTAAAAC
TTTTAAAGTCCATTACATAAGTTCTATAAGAGAAGGTCAAAGCATTACTAAAGCTTCTGTTGATTCTAGGCCAAGACAAG
GGGATTTAGATATTTTTGGAAAGGATGCAGATAATTTAGTTGTTAGCACAGATAAATTTAATTTTTGGGAAAAAATTGCA
GAAGAAATACAAGCTTTGTTAGATGATGATTCTACTAAACCTATTATCAATACTAATGCAGGTATTATAACCTTAAATGC
AACTCCTTATGAAATAACTAGGGTGCAAAATTATTTAAAAGATTTAAACAAAAGACTAAAAAAGCAAGTGTTAATCGATG
TAAGTATAGTTGCAGTTCACTTAAATAAAAGTCATTCTAGTGGGATTAATTGGCAAGAGCTTGCTTTTAAGTTAAATGCA
GATGATAAAGAATTCATACTTAATAAAGGTGGAATTAAAAATATTAATTTAAAATCAAATATAGAAATCAAAGCAATTTT
AAATTTATTACAAGAAAATGGAAAAACTTCAGTTCTTTCTAATCCAAAGCTAATGGCTTTAAATAATCAACAAGCTATAA
TTTCTATTGGTGATACTATTAATTATCAAGTTAAAGAAAGCTCCAAAGGAACAGAAAATGGAACAACTATAAGTGAAACT
TATAATAATTACTCAATATTTGTAGGTATTTTACTAAATATCTTGCCAGAAATTTCAGATGATCATAAAATTATGCTTAG
GATAAATCCAAGTTTAAGTGATTTTAAATATAGTGTAGATAATCACCGCCAAAACAAACCAAGAAATATAGCCCCTGATA
CTATACAAAAAAAATTATCCACTGTTGTTGAAGTGGAAGATGGACAGACTTTGATTTTAGGCGGATTAATCAGTAAAAAT
AGCGTCAATAATCAAAATGAAATTAGTGCTCTTTCGAAAATTCCTTTATTTGGCTTGTTATTTCAAGGAAAGCAAAATAT
AGAAGATGTGAGTGAAATAGTATTCATTATAAAACCAGTGATTGTAAAAGAAGATAAAAAGATATTAAATTTAAAAGAAT
TAGGATTTGATCATGAAGATTATATGTTTTAG
ATGAAAAAAATAATAATATTGTTATTTATTAGCGTATGTTTTGCTAATGGGGCTTTAAAATGCTCTCAAAGAACATTTGA
TATAAGTGTTGAAACAAAAAGTTCTTTGCTTGAGGTTTTAAATGAATTAGGTAGAGAGTGTAGATTTAGTATTATCATTA
AAGATGATTTAGCTAAAAATAAACTAAACAACCAACAAAATTATATTCATATTAGTAAAATGACTCTAAGAGAAATTTTT
GATCTTTTGCTAAAGGAGAATAATCTTGCTTATGAATATGAAAAGAATGTTTTAAAAATTTATGGTAAATTAGTTAAAAC
TTTTAAAGTCCATTACATAAGTTCTATAAGAGAAGGTCAAAGCATTACTAAAGCTTCTGTTGATTCTAGGCCAAGACAAG
GGGATTTAGATATTTTTGGAAAGGATGCAGATAATTTAGTTGTTAGCACAGATAAATTTAATTTTTGGGAAAAAATTGCA
GAAGAAATACAAGCTTTGTTAGATGATGATTCTACTAAACCTATTATCAATACTAATGCAGGTATTATAACCTTAAATGC
AACTCCTTATGAAATAACTAGGGTGCAAAATTATTTAAAAGATTTAAACAAAAGACTAAAAAAGCAAGTGTTAATCGATG
TAAGTATAGTTGCAGTTCACTTAAATAAAAGTCATTCTAGTGGGATTAATTGGCAAGAGCTTGCTTTTAAGTTAAATGCA
GATGATAAAGAATTCATACTTAATAAAGGTGGAATTAAAAATATTAATTTAAAATCAAATATAGAAATCAAAGCAATTTT
AAATTTATTACAAGAAAATGGAAAAACTTCAGTTCTTTCTAATCCAAAGCTAATGGCTTTAAATAATCAACAAGCTATAA
TTTCTATTGGTGATACTATTAATTATCAAGTTAAAGAAAGCTCCAAAGGAACAGAAAATGGAACAACTATAAGTGAAACT
TATAATAATTACTCAATATTTGTAGGTATTTTACTAAATATCTTGCCAGAAATTTCAGATGATCATAAAATTATGCTTAG
GATAAATCCAAGTTTAAGTGATTTTAAATATAGTGTAGATAATCACCGCCAAAACAAACCAAGAAATATAGCCCCTGATA
CTATACAAAAAAAATTATCCACTGTTGTTGAAGTGGAAGATGGACAGACTTTGATTTTAGGCGGATTAATCAGTAAAAAT
AGCGTCAATAATCAAAATGAAATTAGTGCTCTTTCGAAAATTCCTTTATTTGGCTTGTTATTTCAAGGAAAGCAAAATAT
AGAAGATGTGAGTGAAATAGTATTCATTATAAAACCAGTGATTGTAAAAGAAGATAAAAAGATATTAAATTTAAAAGAAT
TAGGATTTGATCATGAAGATTATATGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsD | Campylobacter jejuni subsp. jejuni 81-176 |
57.725 |
100 |
0.581 |