Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BMMGA3_RS11885 Genome accession   NZ_CP007739
Coordinates   2446323..2448689 (-) Length   788 a.a.
NCBI ID   WP_004435979.1    Uniprot ID   I3EAV4
Organism   Bacillus methanolicus MGA3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2441323..2453689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS11870 (BMMGA3_12325) dtd 2442936..2443376 (-) 441 WP_004435972.1 D-aminoacyl-tRNA deacylase -
  BMMGA3_RS11875 (BMMGA3_12330) - 2443388..2445583 (-) 2196 WP_004435976.1 RelA/SpoT family protein -
  BMMGA3_RS11880 (BMMGA3_12335) - 2445820..2446332 (-) 513 WP_004435977.1 adenine phosphoribosyltransferase -
  BMMGA3_RS11885 (BMMGA3_12340) recJ 2446323..2448689 (-) 2367 WP_004435979.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BMMGA3_RS11890 (BMMGA3_12345) - 2448835..2449734 (-) 900 WP_004435981.1 cation diffusion facilitator family transporter -
  BMMGA3_RS11895 (BMMGA3_12350) secDF 2449850..2452117 (-) 2268 WP_004435983.1 protein translocase subunit SecDF -
  BMMGA3_RS11900 (BMMGA3_12355) - 2452320..2452616 (-) 297 WP_004435984.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89314.83 Da        Isoelectric Point: 6.1699

>NTDB_id=123008 BMMGA3_RS11885 WP_004435979.1 2446323..2448689(-) (recJ) [Bacillus methanolicus MGA3]
MLKSKTRWVVRQSDRKKAEKLMQELNITPLVASLLVNRGIDTVESARYFLFPKDQSFHDPYLFKDMDKAVERIRLAIERQ
EPILIYGDYDADGVSSTSVMMMTLRDLGANVDFYIPNRFSEGYGPNEAAFRLAAKRGFKLIITVDTGISALHEANVASEL
GIDLIITDHHEPGPVLPKALAIIHPKLKDSTYPFRELAGVGVAFKLSHALYGHVPEHFLEIVAIGTIADLVSLKGENRLI
AYKGIQQLKATKNIGLQSLLKLSGIEPESIDEETIGFVIAPRLNAAGRLESAEPAVDLLLTDDQDKAEMLAKKIDLLNKE
RQELVNAITEEAIKEVESYYPPEENQVLVIGKEGWNSGVIGIVASRLVEKFYRPVIVFSFDTEKGLAKGSARSIDGFDLF
KNLSACRDILPHFGGHPMAAGMNLHLKDVDELRIRLNDLAKEQLTEEDFIPKTYLDGKIELSDIHLTAIEQMQMLAPYGV
DNPKPKVMIENVNIAAIRKIGSDQSHLKITIESNGASLDGIGFGLGHYYEHISPFSKLSVIGELAINEWNNIRKPQVFLQ
DLAVQSWQLFDFRGLKRFDKLAELVPRENRKWIVFNEENVPKFKGILNDEICLITSCEDAIKMEVDGLNLVLADLPPSKK
ILEHLLAGKKPARIYAQFYKENSDFFSTMPTRDHFKWFYAFLAKKGTFDLKRHGDDLAKYRGWTKETIEFMSQVFFELKF
VTINNGFITLEKNISKRDLSDSKTYQKKLAQFTLENDLLYSSFQQLKGWFDKLFQESVKNEEAMKEWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=123008 BMMGA3_RS11885 WP_004435979.1 2446323..2448689(-) (recJ) [Bacillus methanolicus MGA3]
ATGTTAAAGTCAAAAACAAGGTGGGTTGTCCGCCAATCCGACCGGAAGAAAGCAGAAAAATTAATGCAAGAATTAAACAT
TACTCCCCTGGTAGCATCATTGCTAGTTAATCGCGGAATCGATACCGTGGAAAGTGCACGGTATTTTCTATTTCCAAAAG
ATCAGTCTTTTCATGATCCTTATTTATTTAAGGACATGGATAAAGCTGTAGAAAGGATTCGTCTGGCGATTGAAAGGCAA
GAGCCGATATTAATATATGGCGATTATGATGCTGATGGAGTCAGCAGTACTTCTGTGATGATGATGACATTAAGAGATTT
GGGTGCAAATGTTGACTTTTACATACCCAATCGTTTTTCTGAAGGATATGGTCCAAATGAAGCGGCTTTCAGACTGGCAG
CAAAAAGAGGGTTTAAGCTCATAATCACGGTTGATACAGGTATTTCTGCCCTTCATGAAGCAAACGTTGCCAGTGAACTT
GGAATCGATTTAATCATTACCGATCATCACGAACCGGGACCCGTACTTCCAAAAGCTTTGGCGATCATTCATCCAAAATT
GAAAGACAGTACATATCCATTTCGTGAATTAGCTGGTGTAGGAGTAGCTTTTAAGCTTTCCCACGCGCTTTATGGACATG
TGCCGGAACATTTTCTTGAAATTGTTGCAATTGGGACAATAGCAGACCTTGTTTCTCTTAAAGGAGAAAACCGCCTGATT
GCCTATAAAGGAATACAACAACTAAAGGCAACGAAAAACATCGGACTACAAAGTCTGTTAAAATTAAGCGGCATTGAACC
GGAATCGATTGATGAAGAAACGATCGGCTTTGTTATTGCACCGAGGCTCAATGCCGCCGGAAGGCTTGAAAGTGCAGAAC
CAGCAGTCGATTTATTATTGACTGATGATCAGGATAAAGCGGAAATGCTGGCGAAAAAAATCGACCTGTTAAATAAGGAA
CGGCAAGAGCTTGTTAATGCGATTACAGAAGAAGCTATAAAAGAAGTTGAAAGCTATTATCCGCCTGAAGAAAATCAAGT
TCTTGTTATTGGAAAAGAAGGCTGGAATTCCGGAGTGATTGGAATTGTTGCTTCAAGACTAGTTGAGAAGTTTTATAGAC
CTGTGATTGTTTTTAGTTTTGATACAGAAAAAGGGTTGGCTAAAGGATCTGCAAGAAGCATAGATGGTTTTGATTTGTTC
AAAAACCTTTCTGCATGCAGAGATATCTTGCCGCATTTTGGCGGCCATCCAATGGCAGCAGGAATGAATTTACATCTCAA
AGATGTGGATGAGCTTCGTATCAGACTTAATGATCTGGCAAAAGAACAGTTGACAGAAGAAGATTTTATCCCGAAAACAT
ATTTGGATGGTAAAATAGAATTAAGCGATATCCATTTAACCGCTATCGAACAAATGCAAATGCTTGCTCCTTACGGTGTG
GACAATCCGAAACCGAAAGTGATGATCGAAAATGTAAATATCGCAGCCATTAGAAAAATCGGCTCGGACCAAAGCCATCT
GAAAATAACAATTGAAAGTAATGGAGCATCGCTTGATGGCATTGGTTTTGGGTTGGGACATTATTATGAACATATTTCCC
CTTTTTCCAAACTGTCGGTAATTGGAGAATTAGCCATTAATGAGTGGAACAATATTCGCAAACCGCAAGTTTTTCTTCAA
GATTTGGCTGTTCAATCATGGCAGCTGTTTGATTTTCGCGGTTTAAAGCGTTTTGACAAATTAGCAGAGCTTGTACCGCG
CGAAAATCGAAAATGGATCGTTTTTAACGAAGAAAACGTGCCAAAATTTAAAGGCATCCTAAATGATGAAATCTGTCTTA
TAACTTCGTGTGAAGATGCTATAAAAATGGAAGTTGACGGATTGAATCTCGTTTTGGCTGATCTGCCGCCATCCAAGAAA
ATCCTGGAACATCTTTTAGCCGGCAAAAAACCTGCCAGAATATATGCTCAATTTTATAAAGAAAACAGTGACTTTTTTAG
CACCATGCCGACGAGGGACCATTTCAAATGGTTTTATGCTTTTTTAGCAAAAAAAGGAACGTTCGATCTTAAACGCCATG
GGGACGATCTAGCTAAATACAGAGGCTGGACGAAAGAAACAATTGAATTTATGTCGCAGGTGTTTTTTGAACTGAAATTT
GTTACAATAAACAATGGTTTTATAACATTAGAAAAAAATATTAGCAAACGGGATCTATCAGATTCAAAAACTTACCAGAA
AAAGCTGGCGCAATTTACTCTGGAAAATGATTTATTATATTCATCGTTTCAGCAGTTAAAAGGCTGGTTCGACAAGCTCT
TCCAAGAGTCAGTGAAAAATGAGGAGGCAATGAAAGAATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(317-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

RecJ OB domain (RecJ_OB)

(456-561)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3EAV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.817

99.746

0.537

Multiple sequence alignment