Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BMMGA3_RS05920 Genome accession   NZ_CP007739
Coordinates   1195716..1196495 (+) Length   259 a.a.
NCBI ID   WP_003349038.1    Uniprot ID   -
Organism   Bacillus methanolicus MGA3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1190716..1201495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS05900 (BMMGA3_06075) trmFO 1191335..1192642 (+) 1308 WP_003349032.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BMMGA3_RS05905 (BMMGA3_06080) xerC 1192704..1193606 (+) 903 WP_003349034.1 tyrosine recombinase XerC -
  BMMGA3_RS05910 (BMMGA3_06085) hslV 1193628..1194170 (+) 543 WP_003349036.1 ATP-dependent protease subunit HslV -
  BMMGA3_RS05915 (BMMGA3_06090) hslU 1194189..1195595 (+) 1407 WP_003349037.1 HslU--HslV peptidase ATPase subunit -
  BMMGA3_RS05920 (BMMGA3_06095) codY 1195716..1196495 (+) 780 WP_003349038.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BMMGA3_RS05925 (BMMGA3_06100) flgB 1196946..1197341 (+) 396 WP_034669571.1 flagellar basal body rod protein FlgB -
  BMMGA3_RS05930 (BMMGA3_06105) flgC 1197344..1197796 (+) 453 WP_003349040.1 flagellar basal body rod protein FlgC -
  BMMGA3_RS05935 (BMMGA3_06110) fliE 1197832..1198119 (+) 288 WP_412151024.1 flagellar hook-basal body complex protein FliE -
  BMMGA3_RS05940 (BMMGA3_06115) fliF 1198190..1199776 (+) 1587 WP_003349042.1 flagellar basal-body MS-ring/collar protein FliF -
  BMMGA3_RS05945 (BMMGA3_06120) fliG 1199788..1200804 (+) 1017 WP_003349043.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29157.57 Da        Isoelectric Point: 4.8480

>NTDB_id=122994 BMMGA3_RS05920 WP_003349038.1 1195716..1196495(+) (codY) [Bacillus methanolicus MGA3]
MDLLSKTRKINAMLQKAAGKPVNFKEMAETLRDVIEANIFVVSRRGKLLGFAINQQIENERMKKMLEDRQFPEEYTKNLF
NIQETSPNLDVESEYTAFPVENKDLFRNGLTTIVPIIGGGERLGTLILARLEEQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGHEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELEKLKAN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=122994 BMMGA3_RS05920 WP_003349038.1 1195716..1196495(+) (codY) [Bacillus methanolicus MGA3]
ATGGATTTATTAAGTAAAACAAGAAAAATTAATGCGATGCTGCAAAAAGCAGCAGGAAAACCCGTTAATTTTAAAGAAAT
GGCCGAAACGCTGCGTGACGTTATTGAAGCAAATATTTTCGTTGTCAGCCGCCGCGGGAAACTGTTAGGATTTGCAATTA
ATCAACAAATCGAAAATGAACGCATGAAGAAAATGCTTGAAGACCGCCAATTTCCTGAAGAATATACAAAAAACTTGTTC
AATATTCAGGAAACGTCTCCAAACCTTGATGTTGAAAGTGAATATACCGCATTCCCAGTTGAAAACAAAGACTTATTCCG
CAATGGATTGACTACGATCGTTCCGATTATCGGAGGCGGTGAACGCTTAGGTACTTTGATTTTGGCAAGACTTGAAGAAC
AGTTCCATGACGACGATTTAATTCTTGCCGAATATGGTGCGACCGTTGTAGGAATGGAGATTTTGCGTGAAAAGGCTGAA
GAAATTGAAGAAGAAGCTCGCAGCAAAGCAGTTGTTCAAATGGCAATTAGCTCATTATCTTACAGTGAATTGGAAGCTAT
TGAACACATTTTCGAGGAACTAAACGGTCATGAAGGATTGCTGGTTGCTTCAAAAATTGCTGACCGTGTAGGGATCACCC
GTTCAGTTATTGTAAATGCACTCCGCAAATTGGAGAGTGCCGGAGTAATTGAATCAAGATCACTCGGGATGAAAGGAACA
TATATTAAAGTATTAAACGATAAGTTCCTTGTAGAATTAGAAAAACTAAAAGCAAATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

88.803

100

0.888
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.178

95.367

0.459

Multiple sequence alignment