Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RR41_RS16065 Genome accession   NZ_CP007712
Coordinates   3334563..3334973 (-) Length   136 a.a.
NCBI ID   WP_002036702.1    Uniprot ID   -
Organism   Acinetobacter baumannii LAC-4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3329563..3339973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR41_RS16035 (ABLAC_31970) - 3329649..3329918 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  RR41_RS16040 (ABLAC_31980) rapZ 3329915..3330766 (-) 852 WP_000821671.1 RNase adapter RapZ -
  RR41_RS16045 (ABLAC_31990) panC 3330789..3331637 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  RR41_RS16050 (ABLAC_32000) panB 3331641..3332450 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RR41_RS16055 (ABLAC_32010) folK 3332496..3332978 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RR41_RS16060 (ABLAC_32020) pcnB 3332975..3334438 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  RR41_RS16065 (ABLAC_32030) comEA 3334563..3334973 (-) 411 WP_002036702.1 ComEA family DNA-binding protein Machinery gene
  RR41_RS16070 (ABLAC_32040) mazG 3334942..3335748 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  RR41_RS16075 (ABLAC_32050) - 3335860..3336633 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  RR41_RS16080 (ABLAC_32060) - 3336678..3338984 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15711.00 Da        Isoelectric Point: 10.3828

>NTDB_id=122816 RR41_RS16065 WP_002036702.1 3334563..3334973(-) (comEA) [Acinetobacter baumannii LAC-4]
MQYSMRFWKNKYFVLIILCLGVISPSIYAQSFDQNFQEWKVKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=122816 RR41_RS16065 WP_002036702.1 3334563..3334973(-) (comEA) [Acinetobacter baumannii LAC-4]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGAT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGTTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

45.946

81.618

0.375

Multiple sequence alignment