Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   LSJ_RS08450 Genome accession   NZ_CP007646
Coordinates   1742620..1743450 (-) Length   276 a.a.
NCBI ID   WP_003709392.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain JCM1046     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1737620..1748450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSJ_RS08430 (LSJ_1692) - 1738750..1739706 (+) 957 WP_044005510.1 DhaKLM operon coactivator DhaQ -
  LSJ_RS08435 (LSJ_1693c) dhaS 1739707..1740231 (-) 525 WP_044005511.1 dihydroxyacetone kinase transcriptional activator DhaS -
  LSJ_RS08440 (LSJ_1694c) brnQ 1740377..1741759 (-) 1383 WP_003702059.1 branched-chain amino acid transport system II carrier protein -
  LSJ_RS08445 - 1742299..1742508 (+) 210 WP_044005512.1 hypothetical protein -
  LSJ_RS08450 (LSJ_1695c) endA 1742620..1743450 (-) 831 WP_003709392.1 DNA/RNA non-specific endonuclease Machinery gene
  LSJ_RS08455 - 1743819..1744422 (+) 604 Protein_1643 nitroreductase family protein -
  LSJ_RS08460 (LSJ_1697c) - 1744475..1746406 (-) 1932 WP_034982425.1 heavy metal translocating P-type ATPase -
  LSJ_RS08465 (LSJ_1698) - 1746556..1746870 (+) 315 WP_034982423.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30410.73 Da        Isoelectric Point: 10.4970

>NTDB_id=122025 LSJ_RS08450 WP_003709392.1 1742620..1743450(-) (endA) [Ligilactobacillus salivarius strain JCM1046]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=122025 LSJ_RS08450 WP_003709392.1 1742620..1743450(-) (endA) [Ligilactobacillus salivarius strain JCM1046]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGGCGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACCTGCCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCCCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489

Multiple sequence alignment