Detailed information NTG0121968

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EN18_RS13800
• Genome accession: NZ_CP007634
• Coordinates: 2987534..2988541 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain 2012EL-2176
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2982534..2993541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EN18_RS13765 (EN18_19605)	ftsB	2982585..2982869 (+)	285	WP_001263189.1	cell division protein FtsB	-
EN18_RS13770 (EN18_19610)	ispD	2982866..2983564 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EN18_RS13775 (EN18_19615)	ispF	2983561..2984037 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EN18_RS13780 (EN18_19620)	truD	2984067..2985152 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
EN18_RS13785 (EN18_19625)	surE	2985154..2985906 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
EN18_RS13790 (EN18_19630)	-	2985899..2986525 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EN18_RS13795 (EN18_19635)	nlpD	2986525..2987460 (+)	936	WP_000177568.1	murein hydrolase activator NlpD	-
EN18_RS13800 (EN18_19640)	rpoS	2987534..2988541 (+)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
EN18_RS13805 (EN18_19645)	mutS	2988634..2991222 (-)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
EN18_RS13810 (EN18_19650)	cysM	2991490..2992377 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=121968 EN18_RS13800 WP_000116737.1 2987534..2988541(+) (rpoS) [Vibrio cholerae strain 2012EL-2176]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=121968 EN18_RS13800 WP_000116737.1 2987534..2988541(+) (rpoS) [Vibrio cholerae strain 2012EL-2176]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1