Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MA06_RS19555 Genome accession   NZ_CP007626
Coordinates   3423850..3425727 (-) Length   625 a.a.
NCBI ID   WP_040119227.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain 219298     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3418850..3430727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS32565 - 3421262..3421448 (-) 187 Protein_3436 hypothetical protein -
  MA06_RS19540 (DJ92_3543) - 3421683..3422450 (+) 768 WP_040119226.1 hypothetical protein -
  MA06_RS19545 (DJ92_3544) - 3422561..3423412 (+) 852 WP_006093744.1 phospholipase C -
  MA06_RS32010 - 3423551..3423712 (+) 162 WP_242412202.1 hypothetical protein -
  MA06_RS19555 (DJ92_3545) rcrQ 3423850..3425727 (-) 1878 WP_040119227.1 ABC transporter ATP-binding protein Regulator
  MA06_RS19560 (DJ92_3546) - 3425724..3427964 (-) 2241 WP_040119228.1 ABC transporter ATP-binding protein -
  MA06_RS19565 (DJ92_3547) - 3428410..3428694 (+) 285 WP_040119229.1 ATP-binding protein -
  MA06_RS19570 (DJ92_3548) - 3428739..3429386 (+) 648 WP_080740356.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 69266.05 Da        Isoelectric Point: 6.2554

>NTDB_id=121778 MA06_RS19555 WP_040119227.1 3423850..3425727(-) (rcrQ) [Bacillus pseudomycoides strain 219298]
MSDRKIENRRQGSPGGGHGGGHMGGGMRKIEKAKNFKETMNKLLQYLKPYKFSILIVIIFAIGSAAFAIVGPKILGKATT
KLFEGLVDKVTGVHGATIDFTYIGNIALLLLGLYIASTAFGIIQGYIISGVAQKVSYNFRKEIDEKINRMPLKYFDKTTH
GEVLSRITNDVDTVSQTLNQSMSQIITSVITIIGVLIMMLSISWQMTLVALLILPVSMTLIMGVVKRSQKYFKSQQEYLG
HVNGQVEEIYSGHNIVKAFNTEEEEVKKFEEVNDTLYHSAWKSQFLSGMMMPIMMFIGNIGYVAVSILGGWLAVKRTIAV
GDILAFVQYVRSFTQPIAQVAQIANVLQSTAAAAERVFEFLDEEEEIPEAENPVKLQEVKGEVTFKDVQFGYNPDKIIIN
NFSASIRPGQKVAIVGPTGAGKTTIVKLLMRFYDVNSGAICIDGHDIKDFTREDLRSMFGMVLQDTWLFNGSIMENIRYG
RLGATDEEVIEAANAAHVHSFVKTLPNKYQMELNEEASNVSQGQKQLLTIARALLADPKILILDEATSSIDTRTEVLIQK
AMENLMEGRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLKADGFYASLYNSQFEGADAS

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=121778 MA06_RS19555 WP_040119227.1 3423850..3425727(-) (rcrQ) [Bacillus pseudomycoides strain 219298]
ATGAGTGATAGAAAAATAGAAAATAGAAGACAAGGCAGTCCTGGTGGTGGCCATGGCGGCGGTCATATGGGCGGCGGCAT
GAGAAAGATTGAGAAGGCAAAAAATTTCAAAGAAACGATGAATAAGTTACTTCAATACTTAAAGCCATATAAGTTCTCAA
TCCTAATCGTTATTATTTTCGCAATCGGTAGTGCTGCCTTTGCAATCGTCGGTCCAAAGATTTTAGGTAAAGCAACAACA
AAACTTTTCGAAGGACTCGTAGACAAAGTAACAGGCGTGCACGGTGCTACCATTGACTTTACCTATATCGGAAACATTGC
CCTCCTGCTCCTTGGATTATATATAGCGAGCACTGCGTTTGGCATTATCCAAGGCTATATCATTTCTGGAGTCGCACAAA
AGGTATCTTATAACTTCAGAAAAGAAATTGATGAAAAAATCAACCGTATGCCGCTTAAGTATTTTGATAAAACAACACAT
GGAGAAGTATTATCTAGGATTACAAATGACGTAGATACTGTGAGCCAAACTTTAAATCAAAGTATGTCGCAAATCATTAC
ATCCGTTATTACAATCATCGGTGTACTCATCATGATGTTATCAATCAGCTGGCAAATGACATTAGTAGCTCTCTTAATAT
TACCAGTATCAATGACACTCATAATGGGCGTCGTAAAAAGATCACAAAAATACTTTAAGTCCCAACAAGAGTATTTAGGA
CACGTTAACGGTCAGGTCGAAGAAATTTATAGTGGTCACAATATCGTAAAAGCTTTTAACACTGAAGAAGAAGAAGTGAA
AAAATTCGAAGAGGTGAATGATACTCTTTACCACTCTGCATGGAAATCTCAATTTTTATCTGGAATGATGATGCCGATTA
TGATGTTTATCGGTAATATCGGTTACGTAGCTGTATCCATTTTAGGCGGATGGCTCGCTGTAAAGAGAACAATTGCAGTT
GGAGATATTTTAGCATTTGTGCAATATGTAAGAAGCTTTACGCAACCAATCGCTCAAGTAGCCCAAATCGCTAACGTACT
TCAATCCACTGCAGCTGCTGCAGAAAGAGTTTTCGAATTTTTAGATGAAGAAGAAGAAATTCCGGAAGCAGAAAACCCAG
TGAAGCTTCAAGAAGTTAAAGGAGAAGTTACATTCAAAGATGTTCAATTTGGATATAATCCAGATAAGATCATCATCAAT
AATTTCTCAGCTAGCATTAGGCCTGGACAAAAAGTAGCAATCGTTGGTCCAACCGGAGCAGGTAAAACAACGATCGTAAA
ACTATTAATGCGTTTTTATGATGTAAACAGTGGTGCCATCTGTATAGACGGTCACGACATAAAAGACTTCACCCGCGAAG
ACTTGCGCAGCATGTTCGGGATGGTGCTGCAAGACACATGGCTATTTAACGGCTCCATCATGGAAAACATACGTTACGGT
AGACTGGGTGCAACCGACGAAGAAGTGATTGAAGCAGCAAACGCAGCCCACGTTCACAGCTTCGTAAAAACATTACCAAA
TAAATATCAAATGGAACTAAACGAAGAAGCAAGCAACGTATCCCAAGGACAAAAGCAACTACTAACAATTGCCCGTGCCC
TTCTAGCGGATCCGAAAATACTCATACTCGACGAAGCAACAAGCTCCATTGACACTCGTACAGAAGTGCTGATTCAAAAA
GCCATGGAAAACCTCATGGAAGGCAGAACAAGCTTTATCATCGCTCATAGATTATCAACAATCCGTGATGCCGATTTAAT
CCTTGTCATGAAAGACGGGGATATTGTAGAACAGGGTAATCATGAAGAGTTATTGAAGGCTGATGGTTTCTATGCTTCGC
TTTATAATAGTCAGTTTGAAGGTGCGGATGCCTCTTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(54-336)

ABC transporter (ABC_tran)

(400-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.973

93.28

0.485

Multiple sequence alignment