Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MA06_RS09530 Genome accession   NZ_CP007626
Coordinates   1412349..1414688 (-) Length   779 a.a.
NCBI ID   WP_018782986.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain 219298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1407349..1419688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS31150 (DJ92_1502) - 1407379..1407555 (-) 177 WP_040119001.1 hypothetical protein -
  MA06_RS09505 (DJ92_1503) - 1407646..1407977 (-) 332 Protein_1522 YrdB family protein -
  MA06_RS09510 (DJ92_1504) - 1408052..1408741 (-) 690 WP_040119002.1 alpha/beta hydrolase -
  MA06_RS09515 (DJ92_1505) dtd 1408930..1409370 (-) 441 WP_003200469.1 D-aminoacyl-tRNA deacylase -
  MA06_RS09520 (DJ92_1506) relA 1409388..1411574 (-) 2187 WP_003200467.1 GTP diphosphokinase -
  MA06_RS09525 (DJ92_1507) - 1411789..1412301 (-) 513 WP_003200465.1 adenine phosphoribosyltransferase -
  MA06_RS09530 (DJ92_1508) recJ 1412349..1414688 (-) 2340 WP_018782986.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MA06_RS09535 (DJ92_1509) - 1414808..1415701 (-) 894 WP_018765899.1 cation diffusion facilitator family transporter -
  MA06_RS09540 (DJ92_1510) secDF 1415974..1418235 (-) 2262 WP_003200458.1 protein translocase subunit SecDF -
  MA06_RS09545 (DJ92_1511) - 1418582..1418866 (-) 285 WP_003200455.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 87967.35 Da        Isoelectric Point: 4.8331

>NTDB_id=121756 MA06_RS09530 WP_018782986.1 1412349..1414688(-) (recJ) [Bacillus pseudomycoides strain 219298]
MLQPKTRWKEKSFNEELVSELASKLQLSPLVTSLFLSRGLDTEDKIVDFLNTGQQEFHDPFLLEGMDLTVERIGQAIQNG
EQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHRAGFSLIITVDTGIAAVHEAQVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLKGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VQRGLKQMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAIGRLEDAAPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENNYPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPEKQTAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQADAILTSEDFTPITTVDAICKVEDVTLSAIEEMQKLAPFGV
GNPKPRIAIRDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAHVSVVGEASINEWNNFKKPQLMIQ
DIAVDAWQLFDWRSMRNVESNLAELSREKITMVYFSEEVLNKFSLEEYKEQLIHASEVTDLDGRYIVLLDLPKSTDELRG
LFEAGFPARIYTLFYQENNHLFSTVPTREHFKWYYSFLHQKAPFSLRQHGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEEMKKRDLIESNTYREKMNHLQLEKELIYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=121756 MA06_RS09530 WP_018782986.1 1412349..1414688(-) (recJ) [Bacillus pseudomycoides strain 219298]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAGTCATTTAATGAGGAACTGGTGAGTGAATTAGCAAGTAAATTGCAATT
ATCACCGCTTGTTACTTCGTTATTCCTCAGTAGAGGTTTAGATACAGAAGATAAGATTGTGGATTTTTTAAATACAGGAC
AGCAAGAATTTCACGATCCATTTTTGCTTGAAGGAATGGACCTTACGGTAGAACGTATAGGGCAAGCCATTCAAAATGGA
GAACAAATTTTAATATTCGGAGACTATGATGCGGACGGTGTAAGTAGTACAACCGTTTTATTTCTTGCTCTTCAAGAATT
AGGTGCGGATGTTGAGTTCTATATTCCAAACCGATTTACTGAAGGGTATGGACCGAATGAAGAGGCGTTCCGCTGGGCAC
ACCGTGCGGGATTTTCTCTTATCATTACTGTTGATACAGGTATCGCAGCAGTCCATGAGGCGCAAGTAGCAAAAGAGCTT
GGTATAGATCTTATTATTACAGATCATCATGAGCCGCCGCCAGAACTGCCAGAAGCACTTGCGATTATTCACCCGAAGCT
AAAGGGTGGTGTTTACCCGTTTCATTATTTAGCGGGCGTTGGTGTTGCGTTTAAAGTAGCGCATGCACTACTTGGGCGTG
TGCCGGAGCATTTATTAGAAATTGCAGTGATTGGTACGGTAGCCGATTTAGTATCACTTCATGGTGAAAATAGATTGCTT
GTGCAGCGTGGATTGAAACAAATGCGAATGACAAAAAATATTGGTTTAAAAGCATTATTTAAAGTAGCAAATGTTTCACA
AAGTGAGATTACGGAAGAGAGCATTGGTTTCTCAATTGCACCGCGTATTAATGCAATTGGTCGTTTAGAAGATGCGGCTC
CGGCAGTTCACCTCCTTTTATCAGAAGATCCAGAAGAAGCGAAAGAGCTTGCTGAAGAAATTGATGAACTGAACAAGCTT
CGAAAAGATATTGTAAAGCAAATTACAGAAGAGGCGATTGCAGAGGTAGAAAACAATTATCCGCCAGAGGACAATAAAGT
GTTAGTGCTCGCGAAAGAAGGATGGAATCCAGGAGTAATAGGGATTGTTGCTTCTAAATTAGTAGAACGCTTTTATCGTC
CAACAATTGTATTGTGTATTGATCCCGAGAAGCAAACAGCAAAAGGGTCTGCTCGTAGTATTGCAGGATTTGATTTATTT
GCAAACTTATCAGATTGTAGGGAATTGTTACCGCACTTTGGGGGACATCCAATGGCGGCGGGAATGACGCTTCATATGAA
TGATGTGGATGAACTGCGCCGCCGCTTAAATGAACAAGCAGATGCGATTTTAACGTCTGAAGATTTTACTCCGATTACAA
CAGTTGATGCGATTTGCAAAGTGGAGGATGTGACGCTCTCAGCGATTGAGGAAATGCAGAAGCTCGCACCGTTTGGTGTT
GGAAATCCGAAGCCGCGTATCGCAATTAGAGATGCGGAGTTAGAAAGTATTCGTGCCATTGGATCTGATGGTTCTCATTT
GAAAATGGCACTTCGTGACGGACAGGCGACGTTAGATACGATTGGATTTGGTTTTGGAGCCTATGCGAAAGAAATTTCTC
CAGTTGCTCACGTTTCTGTCGTTGGTGAGGCATCAATTAATGAATGGAATAATTTCAAAAAACCCCAACTTATGATTCAA
GATATTGCGGTAGATGCATGGCAATTATTTGATTGGCGTAGTATGCGTAATGTGGAATCGAACTTAGCAGAACTTTCACG
AGAAAAAATAACAATGGTGTATTTTTCTGAAGAGGTATTAAATAAATTTTCTTTAGAGGAATATAAAGAACAACTTATAC
ATGCTTCAGAAGTGACTGACCTAGATGGTCGTTATATTGTGTTGCTAGATTTACCAAAGTCAACGGATGAATTACGAGGT
TTATTTGAGGCAGGATTCCCAGCGCGAATTTATACGCTGTTTTACCAAGAGAATAATCATTTATTTAGTACAGTTCCAAC
AAGGGAACACTTTAAATGGTACTATTCCTTTTTACACCAAAAAGCACCATTTTCTTTAAGACAACATGGAGAACAGCTAT
GTCGTCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATGGCAGAAGAAATGAAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
TTTACAACTAGAAAAAGAGTTGATTTATAGCACATATCAACAATTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.548

99.487

0.533

Multiple sequence alignment