Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MA06_RS09450 Genome accession   NZ_CP007626
Coordinates   1394154..1396490 (-) Length   778 a.a.
NCBI ID   WP_006096043.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain 219298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1389154..1401490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS09425 (DJ92_1487) alaS 1389215..1391857 (-) 2643 WP_003200499.1 alanine--tRNA ligase -
  MA06_RS09430 (DJ92_1488) - 1392174..1393250 (-) 1077 WP_170957066.1 AI-2E family transporter -
  MA06_RS09435 (DJ92_1489) - 1393417..1393629 (+) 213 WP_018782989.1 hypothetical protein -
  MA06_RS09440 - 1393676..1393804 (-) 129 WP_001102898.1 YrzQ family protein -
  MA06_RS09445 (DJ92_1491) - 1393824..1394012 (-) 189 WP_000490499.1 hypothetical protein -
  MA06_RS09450 (DJ92_1492) recD2 1394154..1396490 (-) 2337 WP_006096043.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MA06_RS09455 (DJ92_1493) - 1396593..1397252 (-) 660 WP_006096042.1 tetratricopeptide repeat protein -
  MA06_RS09460 (DJ92_1494) mnmA 1397366..1398481 (-) 1116 WP_018782988.1 tRNA 2-thiouridine(34) synthase MnmA -
  MA06_RS09465 (DJ92_1495) - 1398498..1399643 (-) 1146 WP_006096041.1 cysteine desulfurase family protein -
  MA06_RS09470 (DJ92_1496) - 1399679..1400095 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87274.83 Da        Isoelectric Point: 5.1394

>NTDB_id=121755 MA06_RS09450 WP_006096043.1 1394154..1396490(-) (recD2) [Bacillus pseudomycoides strain 219298]
MGNQHAMDLFEEEQKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKTGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPAALEGVVNKQKAQEIYDTIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHNDRVRAGCFYTLENVS
LQEGHVFMEKGQLVRETVSLLNNQEGNVTEEDILQCVEMMQGEGKIIIEEDRIYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLLTLGKIEEQLKVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLSPQDYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLDAGAIPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNKKDRSFIGCSGAQIVEVVKQVC
ENAKTKGFNARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSREIAYGDVVYRTGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEKQDMVVVSFDGIEVTYIKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEESAFQSGVNRLDDSMRQTTLAGRLQESKGEVQMVTIDGQEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=121755 MA06_RS09450 WP_006096043.1 1394154..1396490(-) (recD2) [Bacillus pseudomycoides strain 219298]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGCAAAAATTTATAAAAGCACAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAATCATTGAAACAAATGAAACATACGACGAAAAAAAAGTGATGA
TCAACGGTCACTTTCCCCGTATGCATGAAGATGAAGTATTTACATTGACAGGTCACTTTAAAGACCACCCAAAGTACGGA
AAGCAATACTTAGTTGAAACATTTAAAAAAGAATTACCTCAAACAAAAACAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGAATTGGGAAGCGAACAGCAGAAAAGATTGTTGATCATCTCGGAGAACATGCGATTTCTAAAATTATGGACG
ACCCTGCTGCATTAGAAGGTGTTGTAAACAAGCAGAAAGCGCAAGAAATTTATGACACAATTATTGAACACCAAGGGCTT
GAAAAGGTCATGAGCTTTTTAAATGGTTATGGTTTTGGAACGAAGCTCTCGATTAAGATTTATCAGCAGTATAAAGAAAT
GACGCTTGAAGTGATTCGAAATAATCCATATCAGTTGATTGAAGAAGTCGATGGCATCGGTTTTGGAAGAGCTGACGATA
TAGGACGAGCGCTAGGGATATCTGGTAACCATAATGATCGTGTGAGAGCAGGATGTTTCTATACGTTAGAAAATGTTTCG
CTCCAAGAAGGTCATGTGTTTATGGAAAAGGGTCAACTAGTTCGAGAAACCGTATCGCTTTTAAATAATCAAGAGGGTAA
TGTGACGGAAGAAGATATTTTGCAATGCGTTGAAATGATGCAAGGTGAAGGGAAAATCATTATAGAAGAAGACCGCATTT
ATTTAGCTTCGTTATTCTATTCCGAAAAGGGCGTTGTCAAATCAATCCGCCGTCTCATGAACCAAGAAGAGACGCCTTCG
TTTCCTGAAGCGGAAGTATTATTAACGTTAGGGAAAATTGAAGAGCAGCTAAAAGTACAGTATGCGCCGCTTCAACAAGA
GGCAATTCAAACTGCGCTTCATAAGCCGATGATGTTATTAACCGGCGGACCTGGTACAGGGAAGACGACCGTTATTAAAG
GAATTGTCGAAATGTATGCTTCCTTGCATGGTTTATCATTAAGCCCGCAAGATTACAGTGATGATAATCCGTTTCCGATT
CTGTTAACAGCTCCGACAGGCCGCGCTGCGAAGCGGATGAGTGAGTCAACAGGGCTTCCTGCTTGTACGATTCACCGCTT
ACTTGGTTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGACCCTGTACAAGGAAAGTTACTTATCATTGATGAGT
TTTCAATGGTTGATATTTGGCTCGCGAATCAATTGTTTAAATCATTACCAACAAACATTCAAGTAATTGTTGTAGGTGAT
GAAGATCAATTACCTTCTGTAGGGCCTGGACAAGTGTTGAAAGATTTATTAGATGCTGGTGCAATTCCGACAGTGAAGTT
AACAGAGATTTACCGTCAAGCAGAAGGGTCATCCGTTATTCAGCTTGCCCATGCGATAAAAAATGGTACGCTGCCACCAG
ACTTAGCACAAAATAAAAAAGATCGTTCGTTTATTGGTTGCTCAGGTGCTCAAATTGTTGAGGTTGTAAAACAAGTATGT
GAAAACGCGAAGACGAAAGGGTTTAATGCAAGAGATGTCCAAGTGTTAGCGCCTATGTATCGCGGTCCGGCAGGTATTAA
TGTGCTAAATGAGGCACTCCAAGAAGTATTTAATCCGAAGAAAGAAAAGAGTAGAGAAATTGCCTACGGTGATGTTGTGT
ATCGAACGGGTGATAAAGTATTGCAGCTCGTAAATCAACCAGAAAGCCAAGTGTTTAATGGTGACATTGGAGAAATTGTT
TCTGTATTTTATGCAAAGGAAAATGTGGAGAAACAAGATATGGTTGTTGTTTCGTTCGATGGGATTGAAGTAACGTATAT
AAAGCCAGATTTAAATCAAATTACACATGCGTATTGTTGTTCAATTCATAAGTCACAAGGAAGTGAATTTCCAATTGTAA
TTATGCCGATTGTAAAGAGTTATTACCGCATGTTACGCCGTAATTTAATTTATACAGGTATTACGAGAAGTAAAAAGTTT
CTAATTATTTGCGGAGAAGAATCAGCCTTTCAATCTGGTGTGAATCGTCTTGATGATTCCATGCGGCAAACAACGTTAGC
TGGTCGCTTGCAGGAATCAAAAGGGGAAGTGCAAATGGTTACGATTGATGGCCAGGAGATGGATGTGGAAAACATTTCAC
CGTATGATTTTATGTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-547)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.522

100

0.585

Multiple sequence alignment