Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MA06_RS06605 Genome accession   NZ_CP007626
Coordinates   871243..872022 (-) Length   259 a.a.
NCBI ID   WP_000421292.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain 219298     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 866243..877022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS06580 (DJ92_910) uppS 866980..867756 (-) 777 WP_006095735.1 isoprenyl transferase -
  MA06_RS06585 (DJ92_911) frr 867842..868399 (-) 558 WP_018780930.1 ribosome recycling factor -
  MA06_RS06590 (DJ92_912) pyrH 868402..869124 (-) 723 WP_003199491.1 UMP kinase -
  MA06_RS06595 (DJ92_913) tsf 869191..870078 (-) 888 WP_018764711.1 translation elongation factor Ts -
  MA06_RS06600 (DJ92_914) rpsB 870181..870882 (-) 702 WP_018764712.1 30S ribosomal protein S2 -
  MA06_RS06605 (DJ92_915) codY 871243..872022 (-) 780 WP_000421292.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MA06_RS06610 (DJ92_916) hslU 872100..873491 (-) 1392 WP_003199484.1 ATP-dependent protease ATPase subunit HslU -
  MA06_RS06615 (DJ92_917) hslV 873514..874056 (-) 543 WP_003199482.1 ATP-dependent protease proteolytic subunit HslV -
  MA06_RS06620 (DJ92_918) xerC 874099..874998 (-) 900 WP_016133222.1 tyrosine recombinase XerC -
  MA06_RS06625 (DJ92_919) trmFO 875064..876368 (-) 1305 WP_006095738.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28801.07 Da        Isoelectric Point: 4.7947

>NTDB_id=121748 MA06_RS06605 WP_000421292.1 871243..872022(-) (codY) [Bacillus pseudomycoides strain 219298]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSQFTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=121748 MA06_RS06605 WP_000421292.1 871243..872022(-) (codY) [Bacillus pseudomycoides strain 219298]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAACCTGTAAACTTTAGAGAAAT
GTCAGATACAATGTGTGAAGTAATTGAAGCAAACGTATTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCAATTC
ACCAACAAATCGAGAATGAGCGCATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCCTATTC
AACGTTACAGAAACATCTTCAAACTTAGATGTAAACAGTCAATTTACAGCATTCCCTGTAGAAAACAAAGAATTATTCGG
TCAAGGTTTAACTACAATTGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTGTTAGCGCGTCTTGGTCAAG
AATTTTTAGATGATGATTTAATTCTTGCTGAATACAGCTCAACTGTAGTAGGTATGGAAATCTTACGCGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGTAGTAAAGCGGTCGTTCAAATGGCAATTAGCTCGTTATCATACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTGAACGACAAGTTTTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment