Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DJ48_RS02585 Genome accession   NZ_CP007618
Coordinates   372874..373653 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus anthracis strain 2000031021     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 367874..378653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ48_RS02565 (DJ48_410) trmFO 368528..369832 (+) 1305 WP_009879846.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DJ48_RS02570 (DJ48_411) xerC 369898..370797 (+) 900 WP_001101227.1 tyrosine recombinase XerC -
  DJ48_RS02575 (DJ48_412) hslV 370840..371382 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  DJ48_RS02580 (DJ48_413) hslU 371405..372796 (+) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  DJ48_RS02585 (DJ48_414) codY 372874..373653 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DJ48_RS02590 (DJ48_415) rpsB 374004..374705 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  DJ48_RS02595 (DJ48_416) tsf 374809..375696 (+) 888 WP_001018581.1 translation elongation factor Ts -
  DJ48_RS02600 (DJ48_417) pyrH 375763..376485 (+) 723 WP_000042663.1 UMP kinase -
  DJ48_RS02605 (DJ48_418) frr 376488..377045 (+) 558 WP_000531503.1 ribosome recycling factor -
  DJ48_RS02610 (DJ48_419) uppS 377131..377907 (+) 777 WP_000971301.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=121677 DJ48_RS02585 WP_000421288.1 372874..373653(+) (codY) [Bacillus anthracis strain 2000031021]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=121677 DJ48_RS02585 WP_000421288.1 372874..373653(+) (codY) [Bacillus anthracis strain 2000031021]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment