Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | EG64_RS07175 | Genome accession | NZ_CP007606 |
| Coordinates | 1475133..1475396 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177716.1 | Uniprot ID | T0EUE0 |
| Organism | Helicobacter pylori strain BM013B | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1470133..1480396
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG64_RS07150 (EG64_07485) | - | 1472502..1473280 (-) | 779 | Protein_1367 | DNA methyltransferase | - |
| EG64_RS07160 (EG64_07495) | - | 1473470..1474258 (+) | 789 | WP_080279686.1 | integrase | - |
| EG64_RS07165 (EG64_07500) | - | 1474362..1474841 (+) | 480 | WP_000571125.1 | hypothetical protein | - |
| EG64_RS07170 (EG64_07505) | comB2 | 1474838..1475122 (+) | 285 | WP_000736478.1 | TrbC/VirB2 family protein | Machinery gene |
| EG64_RS07175 (EG64_07510) | comB3 | 1475133..1475396 (+) | 264 | WP_001177716.1 | hypothetical protein | Machinery gene |
| EG64_RS07180 (EG64_07515) | - | 1475408..1475644 (+) | 237 | WP_038418221.1 | hypothetical protein | - |
| EG64_RS07185 (EG64_07520) | - | 1475644..1478220 (+) | 2577 | WP_038418222.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| EG64_RS08520 (EG64_07525) | - | 1478217..1478357 (+) | 141 | WP_000789926.1 | hypothetical protein | - |
| EG64_RS07195 (EG64_07530) | - | 1478350..1479486 (+) | 1137 | WP_038418224.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9970.83 Da Isoelectric Point: 5.7206
>NTDB_id=121621 EG64_RS07175 WP_001177716.1 1475133..1475396(+) (comB3) [Helicobacter pylori strain BM013B]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=121621 EG64_RS07175 WP_001177716.1 1475133..1475396(+) (comB3) [Helicobacter pylori strain BM013B]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |