Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   EG64_RS00095 Genome accession   NZ_CP007606
Coordinates   13460..13741 (+) Length   93 a.a.
NCBI ID   WP_001272691.1    Uniprot ID   K2KII6
Organism   Helicobacter pylori strain BM013B     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8460..18741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG64_RS00075 (EG64_00075) groES 9027..9383 (-) 357 WP_000671934.1 co-chaperone GroES -
  EG64_RS00080 (EG64_00085) dnaG 9670..11349 (+) 1680 WP_038417094.1 DNA primase -
  EG64_RS00085 (EG64_00090) - 11346..12398 (+) 1053 WP_038417095.1 MnmA/TRMU family protein -
  EG64_RS00090 (EG64_00095) - 12487..13314 (+) 828 WP_038417096.1 DUF5718 family protein -
  EG64_RS00095 (EG64_00100) comB2 13460..13741 (+) 282 WP_001272691.1 TrbC/VirB2 family protein Machinery gene
  EG64_RS00100 (EG64_00105) comB3 13741..14004 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  EG64_RS00105 (EG64_00110) comB4 14006..16369 (+) 2364 WP_038417097.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  EG64_RS00110 (EG64_00115) - 16675..18015 (+) 1341 WP_038417098.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10511.76 Da        Isoelectric Point: 9.1450

>NTDB_id=121601 EG64_RS00095 WP_001272691.1 13460..13741(+) (comB2) [Helicobacter pylori strain BM013B]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGVF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=121601 EG64_RS00095 WP_001272691.1 13460..13741(+) (comB2) [Helicobacter pylori strain BM013B]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTTGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATCT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAGTTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K2KII6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment