Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   EG63_RS07165 Genome accession   NZ_CP007604
Coordinates   1474859..1475143 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain BM013A     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469859..1480143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG63_RS07145 (EG63_07480) - 1472523..1473301 (-) 779 Protein_1368 DNA methyltransferase -
  EG63_RS07155 (EG63_07490) - 1473491..1474279 (+) 789 WP_080279686.1 integrase -
  EG63_RS07160 (EG63_07495) - 1474383..1474862 (+) 480 WP_000571125.1 hypothetical protein -
  EG63_RS07165 (EG63_07500) comB2 1474859..1475143 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  EG63_RS07170 (EG63_07505) comB3 1475154..1475417 (+) 264 WP_001177716.1 hypothetical protein Machinery gene
  EG63_RS07175 (EG63_07510) - 1475429..1475665 (+) 237 WP_038418221.1 hypothetical protein -
  EG63_RS07180 (EG63_07515) - 1475665..1478241 (+) 2577 WP_038418222.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  EG63_RS08510 (EG63_07520) - 1478238..1478378 (+) 141 WP_000789926.1 hypothetical protein -
  EG63_RS07190 (EG63_07525) - 1478371..1479507 (+) 1137 WP_038418224.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=121577 EG63_RS07165 WP_000736478.1 1474859..1475143(+) (comB2) [Helicobacter pylori strain BM013A]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=121577 EG63_RS07165 WP_000736478.1 1474859..1475143(+) (comB2) [Helicobacter pylori strain BM013A]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment