Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ayp1020_RS02905 Genome accession   NZ_CP007601
Coordinates   598398..599450 (+) Length   350 a.a.
NCBI ID   WP_002437037.1    Uniprot ID   A0A4Q9WJI9
Organism   Staphylococcus capitis subsp. capitis strain AYP1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 593398..604450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ayp1020_RS02880 (AYP1020_0589) ymfI 594226..594933 (+) 708 WP_047796209.1 elongation factor P 5-aminopentanone reductase -
  ayp1020_RS02885 (AYP1020_0590) - 595091..595918 (+) 828 WP_002436330.1 YmfK family protein -
  ayp1020_RS02890 (AYP1020_0591) - 595937..596329 (+) 393 WP_002436354.1 helix-turn-helix domain-containing protein -
  ayp1020_RS02895 (AYP1020_0592) pgsA 596357..596938 (+) 582 WP_002469863.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ayp1020_RS02900 (AYP1020_0593) - 597081..598229 (+) 1149 WP_047796210.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ayp1020_RS02905 (AYP1020_0594) recA 598398..599450 (+) 1053 WP_002437037.1 recombinase RecA Machinery gene
  ayp1020_RS02910 (AYP1020_0595) rny 599684..601243 (+) 1560 WP_002469868.1 ribonuclease Y -
  ayp1020_RS02915 (AYP1020_0596) - 601589..601804 (-) 216 WP_002437019.1 hypothetical protein -
  ayp1020_RS02920 (AYP1020_0597) - 601965..602759 (+) 795 WP_023350373.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37971.88 Da        Isoelectric Point: 4.9318

>NTDB_id=121506 ayp1020_RS02905 WP_002437037.1 598398..599450(+) (recA) [Staphylococcus capitis subsp. capitis strain AYP1020]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=121506 ayp1020_RS02905 WP_002437037.1 598398..599450(+) (recA) [Staphylococcus capitis subsp. capitis strain AYP1020]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9WJI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.143

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

71.341

93.714

0.669
  recA Streptococcus pneumoniae TIGR4

64.011

100

0.666
  recA Streptococcus pneumoniae Rx1

64.011

100

0.666
  recA Streptococcus pneumoniae D39

64.011

100

0.666
  recA Streptococcus pneumoniae R6

64.011

100

0.666
  recA Streptococcus mutans UA159

63.687

100

0.651
  recA Streptococcus mitis NCTC 12261

64.489

100

0.649
  recA Streptococcus pyogenes NZ131

68.997

94

0.649
  recA Acinetobacter baumannii D1279779

63.714

100

0.637
  recA Acinetobacter baylyi ADP1

63.689

99.143

0.631
  recA Neisseria gonorrhoeae strain FA1090

64.244

98.286

0.631
  recA Neisseria gonorrhoeae MS11

64.244

98.286

0.631
  recA Neisseria gonorrhoeae MS11

64.244

98.286

0.631
  recA Streptococcus mitis SK321

66.366

95.143

0.631
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.571

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

94

0.617
  recA Helicobacter pylori 26695

65.244

93.714

0.611
  recA Helicobacter pylori strain NCTC11637

64.939

93.714

0.609
  recA Vibrio cholerae strain A1552

65.031

93.143

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.143

0.606
  recA Pseudomonas stutzeri DSM 10701

59.824

97.429

0.583
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.429

0.58
  recA Glaesserella parasuis strain SC1401

57.714

100

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.571

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.442

91.143

0.56

Multiple sequence alignment