Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DX05_RS06980 Genome accession   NZ_CP007572
Coordinates   1384223..1386040 (-) Length   605 a.a.
NCBI ID   WP_000481823.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1379223..1391040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DX05_RS06960 (DX05_07085) - 1379828..1381057 (-) 1230 WP_000489520.1 HAMP domain-containing sensor histidine kinase -
  DX05_RS06965 (DX05_07090) - 1381057..1381743 (-) 687 WP_001264422.1 response regulator transcription factor -
  DX05_RS06970 (DX05_07095) - 1381745..1382371 (-) 627 WP_000449636.1 GTP pyrophosphokinase -
  DX05_RS06975 (DX05_07100) rcrQ 1382479..1384233 (-) 1755 WP_000851088.1 ABC transporter ATP-binding protein Regulator
  DX05_RS06980 (DX05_07105) rcrP 1384223..1386040 (-) 1818 WP_000481823.1 ABC transporter ATP-binding protein Regulator
  DX05_RS06985 (DX05_07110) - 1386087..1386527 (-) 441 WP_000431168.1 MarR family transcriptional regulator -
  DX05_RS06990 (DX05_07115) - 1386796..1388868 (+) 2073 WP_000726912.1 bifunctional metallophosphatase/5'-nucleotidase -
  DX05_RS06995 (DX05_07120) - 1388905..1389315 (-) 411 WP_000594934.1 peptide deformylase -
  DX05_RS07000 (DX05_07125) gdhA 1389385..1390734 (-) 1350 WP_000200441.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67480.27 Da        Isoelectric Point: 6.7838

>NTDB_id=121168 DX05_RS06980 WP_000481823.1 1384223..1386040(-) (rcrP) [Streptococcus agalactiae strain GBS6]
MFNIFKRLNGKEWLMIVASTILVCLAVWMDLKTPEYMSDITRMLQTKGTKLEALWDPGLKMLAFSFGSFLVAVMVVFLGA
RTAASFTSRLRSDIFNHVMDYSDAEIKRFSIPSLLTRTTNDLTQLQILIVMGMQVVTRGPIMAIWALTKIWGKSDQWTGA
VGVAVIIVMILLSVLLLLAFPRQRQIQGFTDALNATTREALSGVRVIRAYNAEKYQTDKFKRENDDLTKLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGSYLINDISVPKVTGTSVSVLAAKSAITDRVDLFSNMVVFSSYAMQVVMGFMMMVAIFIIM
PRALVSARRINEVLTLAPTVTFKENSHIQSAQKGQIEFQDVSFHYSKDSEAVIEHVSFKADTGQTVAFIGSTGSGKSTLV
NLVPRFYDATEGAIKLDGIDIKEYSHNDLNNKIGYIPQKAVLFSGTVRSNMILGESGREELSDEEIWQALELAQAKEFIE
AKEKGLDTEVAQGGSNFSGGQKQRLAIARALARHPEILIFDDSFSALDYKTDHILRHELKEKTAAMTKLIVAQRISTIMD
ADLILVLDQGKVVGQGTHKELLSNNEVYQEIAYSQLSKEELENEN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=121168 DX05_RS06980 WP_000481823.1 1384223..1386040(-) (rcrP) [Streptococcus agalactiae strain GBS6]
ATGTTTAATATTTTCAAGCGACTCAATGGTAAAGAATGGTTGATGATTGTGGCGAGTACTATATTAGTGTGTCTAGCGGT
TTGGATGGACCTAAAGACTCCAGAATATATGTCTGATATCACACGTATGTTGCAAACTAAAGGTACAAAGTTAGAGGCTC
TTTGGGATCCTGGACTAAAAATGCTTGCCTTTTCATTTGGTAGTTTTTTAGTAGCAGTAATGGTAGTTTTTTTAGGTGCT
AGGACAGCAGCTAGTTTTACTAGTCGATTACGTTCAGATATTTTTAACCATGTGATGGATTATTCTGATGCAGAAATTAA
GCGATTTTCTATCCCCTCTCTATTAACGCGCACAACTAACGACTTGACTCAGCTACAGATCCTTATTGTAATGGGAATGC
AGGTTGTTACCCGTGGACCAATTATGGCAATATGGGCTTTGACTAAAATTTGGGGTAAAAGCGATCAATGGACTGGGGCA
GTTGGAGTAGCGGTTATTATCGTTATGATATTACTTAGCGTTCTACTCTTACTCGCTTTTCCGAGACAACGTCAAATCCA
AGGTTTTACAGATGCGCTTAATGCAACTACTAGAGAGGCACTCTCTGGTGTTAGAGTTATTCGTGCCTACAATGCTGAAA
AGTATCAAACAGATAAGTTCAAACGTGAAAATGACGATTTAACAAAATTGAACCTTTTTGTTTATAGATTGATGTCGCTT
ATGAATCCTGTGATGACAGTGGTTTCATCTGGATTGACTTTAGCTATTTATTGGATTGGCTCTTATTTGATTAATGATAT
CTCTGTGCCTAAAGTTACAGGAACAAGTGTATCTGTATTGGCTGCTAAATCAGCTATCACTGATCGAGTGGATCTTTTTT
CAAACATGGTTGTTTTTTCATCTTATGCTATGCAAGTTGTTATGGGATTTATGATGATGGTAGCTATTTTTATCATCATG
CCTCGTGCTTTAGTATCGGCTAGACGTATTAATGAGGTACTAACTTTAGCCCCAACAGTAACTTTTAAAGAAAATAGTCA
TATTCAAAGTGCACAAAAAGGTCAAATTGAGTTTCAAGATGTGTCATTTCATTATAGTAAAGATTCTGAAGCGGTTATTG
AACATGTATCTTTCAAAGCAGATACTGGTCAGACAGTGGCATTTATTGGGTCTACAGGTTCTGGAAAATCCACTTTAGTC
AATTTAGTTCCACGTTTTTATGACGCCACAGAGGGGGCAATTAAACTTGATGGCATTGATATAAAGGAATACTCTCACAA
TGATTTGAATAATAAAATTGGCTATATTCCACAGAAAGCTGTTCTCTTTAGTGGGACAGTACGTTCTAATATGATTTTGG
GAGAGAGTGGCAGGGAGGAACTTAGTGATGAAGAAATTTGGCAAGCACTCGAATTAGCGCAAGCTAAAGAATTTATCGAG
GCTAAAGAAAAAGGATTAGATACAGAAGTCGCTCAAGGTGGTAGTAACTTTTCAGGAGGACAAAAACAACGCTTGGCAAT
TGCACGTGCTTTAGCACGTCACCCTGAAATTCTCATTTTTGATGACTCATTTTCAGCGTTAGATTATAAAACAGATCATA
TTTTACGCCATGAGCTGAAAGAAAAAACAGCTGCTATGACGAAATTAATTGTCGCTCAACGCATTTCAACTATCATGGAT
GCTGATCTCATTTTAGTGCTAGATCAAGGTAAAGTTGTTGGGCAAGGAACACATAAGGAATTGTTATCAAATAATGAAGT
GTATCAAGAGATAGCCTATTCTCAATTGTCTAAGGAGGAATTGGAAAATGAAAACTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(58-272)

ABC transporter (ABC_tran)

(374-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

77.944

99.669

0.777

Multiple sequence alignment