Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DK42_RS06945 Genome accession   NZ_CP007571
Coordinates   1386217..1387971 (-) Length   584 a.a.
NCBI ID   WP_000851088.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS2-NM     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381217..1392971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK42_RS06920 (DK42_07050) mvaD 1381646..1382590 (-) 945 WP_000348826.1 diphosphomevalonate decarboxylase -
  DK42_RS06925 (DK42_07055) mvk 1382572..1383450 (-) 879 WP_000659719.1 mevalonate kinase -
  DK42_RS06930 (DK42_07060) - 1383566..1384795 (-) 1230 WP_041330266.1 HAMP domain-containing sensor histidine kinase -
  DK42_RS06935 (DK42_07065) - 1384795..1385481 (-) 687 WP_001264422.1 response regulator transcription factor -
  DK42_RS06940 (DK42_07070) - 1385483..1386109 (-) 627 WP_000449636.1 GTP pyrophosphokinase -
  DK42_RS06945 (DK42_07075) rcrQ 1386217..1387971 (-) 1755 WP_000851088.1 ABC transporter ATP-binding protein Regulator
  DK42_RS06950 (DK42_07080) rcrP 1387961..1389778 (-) 1818 WP_000481823.1 ABC transporter ATP-binding protein Regulator
  DK42_RS06955 (DK42_07085) - 1389825..1390265 (-) 441 WP_000431168.1 MarR family transcriptional regulator -
  DK42_RS06960 (DK42_07090) - 1390533..1392605 (+) 2073 WP_000726912.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64482.76 Da        Isoelectric Point: 7.4327

>NTDB_id=121117 DK42_RS06945 WP_000851088.1 1386217..1387971(-) (rcrQ) [Streptococcus agalactiae strain GBS2-NM]
MKTKSQKTSFFSNLSPYLKGYKLLFALAIVLATLSSLTTVIGPDRLKEMTDLMVKGLAGNIDLAKIGHIAGQLAVLYVLG
ALVSYLASFIVTTIIQKFAQGMRNAIADKINKIPLSYFDSHTQGDTLSRVTNDVDLMTQSFNQSLVTMVASTVLLVGSLI
MMFKTDWHLATTAIISVFSGFALSSIIMVKSQPLFKKQQVNLANISGYVEEIYSGHNIVTSHNARQQAKSDFQLLNDKLH
SSMWKSQFFSGIMMPLMQFIGNFGYVMVCVVGAMLAIKGTITMGTIVAFMTYVRIFTQPIGQIAQGITQLQSASAAMGRV
FEFLNETNMQEDKHKVLNLPKFKGHVSFEHVKFGYSDNKTIIHDFTSEAQPGQKVAIVGPTGAGKTTIVNLLMRFYDVNS
GSISIDDINIQDMKRSQVHDAFSMVLQDTWLFEGTIKENLIFNQTTISDDEVQEAAKAVGIHHFIMTLPKGYDTVLDDAV
TLSVGQKQLLTIARALLKNSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKDGNIIEQ
GNHDVLMSQSGFYADLYNSQFESA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=121117 DK42_RS06945 WP_000851088.1 1386217..1387971(-) (rcrQ) [Streptococcus agalactiae strain GBS2-NM]
ATGAAAACTAAATCACAAAAAACGTCTTTTTTCTCTAATTTGTCTCCGTACCTCAAAGGTTACAAACTTCTTTTTGCGTT
AGCAATTGTGTTAGCAACTTTATCAAGCTTGACAACAGTTATAGGACCAGACCGTCTTAAAGAGATGACGGATCTTATGG
TAAAAGGCTTGGCTGGTAATATTGACTTAGCCAAAATCGGTCATATTGCAGGGCAATTGGCAGTATTATATGTTTTAGGT
GCATTAGTATCCTATCTAGCAAGTTTTATTGTAACGACTATTATTCAAAAATTTGCTCAAGGCATGCGCAATGCTATTGC
TGATAAAATCAATAAAATACCTTTGAGTTATTTTGATAGCCATACTCAAGGTGATACTTTATCTCGTGTTACAAATGATG
TGGATTTGATGACACAGTCTTTTAACCAAAGTTTAGTTACTATGGTTGCATCTACAGTGTTATTGGTTGGTTCATTAATT
ATGATGTTCAAAACAGATTGGCATTTAGCAACAACGGCGATTATATCGGTATTTTCAGGATTCGCTCTTTCTTCAATCAT
TATGGTGAAGAGTCAGCCTTTATTTAAAAAGCAACAGGTGAATTTGGCTAATATATCTGGATATGTAGAAGAAATTTACT
CAGGACACAACATTGTTACTAGTCATAATGCAAGACAGCAGGCTAAGTCAGATTTTCAACTATTAAATGATAAACTTCAC
AGTTCCATGTGGAAATCACAATTTTTCTCTGGAATTATGATGCCTCTGATGCAGTTTATTGGTAATTTTGGTTATGTGAT
GGTGTGTGTGGTTGGTGCCATGTTAGCTATCAAAGGAACAATTACTATGGGTACAATTGTTGCTTTTATGACCTATGTTC
GTATTTTTACACAGCCTATTGGTCAGATTGCTCAAGGAATTACACAATTACAGTCTGCTAGTGCAGCCATGGGACGTGTT
TTTGAATTTTTAAATGAAACAAATATGCAAGAGGATAAACACAAAGTGTTAAATCTTCCTAAGTTTAAGGGGCATGTGTC
CTTTGAACATGTCAAGTTTGGTTATAGTGATAACAAGACTATTATTCATGACTTTACTTCGGAAGCACAGCCTGGTCAGA
AAGTTGCTATTGTAGGACCAACTGGCGCAGGTAAAACGACAATTGTTAATTTATTGATGCGTTTTTATGATGTTAATTCA
GGTAGTATTTCCATAGATGACATCAATATCCAAGACATGAAACGTAGTCAAGTTCATGATGCTTTCTCGATGGTTCTTCA
AGATACATGGTTGTTTGAGGGAACTATTAAAGAAAATTTGATTTTTAACCAGACGACAATCAGTGATGATGAGGTTCAAG
AAGCTGCTAAGGCAGTCGGTATACATCATTTTATAATGACACTACCTAAAGGGTATGATACTGTCCTTGATGACGCTGTG
ACATTGTCAGTTGGACAAAAGCAATTATTAACCATTGCTCGAGCTCTTTTGAAAAATTCTCCCTTACTTATCTTAGATGA
AGCAACTTCATCTGTTGATACACGTACAGAAGAGTTAATTCAAAAAGCTATGGACAAACTTATGGAAGGAAGAACATCAT
TTGTTATCGCACATCGTTTATCAACGATTAAAAACGCAGACTTGATTTTGGTCATGAAAGATGGGAATATCATTGAGCAA
GGCAATCATGATGTTTTGATGTCTCAAAGTGGTTTTTATGCTGATCTGTATAATTCTCAATTCGAATCAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-510)

ABC transporter transmembrane region (ABC_membrane)

(26-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

75.952

98.973

0.752

Multiple sequence alignment