Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DK42_RS01165 | Genome accession | NZ_CP007571 |
| Coordinates | 204449..205423 (+) | Length | 324 a.a. |
| NCBI ID | WP_001008569.1 | Uniprot ID | A0AAD2WXW1 |
| Organism | Streptococcus agalactiae strain GBS2-NM | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 199449..210423
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK42_RS01140 (DK42_01155) | - | 200048..201460 (-) | 1413 | WP_017771557.1 | IS1182 family transposase | - |
| DK42_RS01145 (DK42_01160) | comYA | 201625..202596 (+) | 972 | WP_000250798.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DK42_RS01150 (DK42_01165) | comYB | 202490..203533 (+) | 1044 | WP_223297804.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DK42_RS01155 (DK42_01170) | comGF | 203530..203985 (+) | 456 | WP_000793378.1 | competence type IV pilus minor pilin ComGF | - |
| DK42_RS01160 (DK42_01175) | comGG | 203963..204334 (+) | 372 | WP_000601101.1 | competence type IV pilus minor pilin ComGG | - |
| DK42_RS01165 (DK42_01180) | comYH | 204449..205423 (+) | 975 | WP_001008569.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DK42_RS01170 (DK42_01185) | - | 205455..206648 (+) | 1194 | WP_000047534.1 | acetate kinase | - |
| DK42_RS01175 | - | 206776..206968 (+) | 193 | Protein_179 | helix-turn-helix transcriptional regulator | - |
| DK42_RS11065 | - | 206947..207213 (+) | 267 | Protein_180 | hypothetical protein | - |
| DK42_RS01180 (DK42_01195) | - | 207282..207947 (+) | 666 | WP_000008108.1 | type II CAAX endopeptidase family protein | - |
| DK42_RS01185 (DK42_01200) | proC | 207968..208738 (-) | 771 | WP_001881026.1 | pyrroline-5-carboxylate reductase | - |
| DK42_RS01190 (DK42_01205) | pepA | 208808..209875 (-) | 1068 | WP_001281321.1 | glutamyl aminopeptidase | - |
| DK42_RS01195 (DK42_01210) | - | 210060..210299 (-) | 240 | WP_000660182.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37131.08 Da Isoelectric Point: 4.4041
>NTDB_id=121089 DK42_RS01165 WP_001008569.1 204449..205423(+) (comYH) [Streptococcus agalactiae strain GBS2-NM]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDIVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGCS
VQFIQEDAVRPQILKESDVIISDLPVGYYPNDDIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIE
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDIVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGCS
VQFIQEDAVRPQILKESDVIISDLPVGYYPNDDIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIE
Nucleotide
Download Length: 975 bp
>NTDB_id=121089 DK42_RS01165 WP_001008569.1 204449..205423(+) (comYH) [Streptococcus agalactiae strain GBS2-NM]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATTGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTTGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTGTAGT
GTCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGATATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAGAATAG
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATTGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTTGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTGTAGT
GTCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGATATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
67.302 |
97.222 |
0.654 |
| comYH | Streptococcus mutans UA140 |
67.302 |
97.222 |
0.654 |