Detailed information NTG0121084

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DK42_RS01055
• Genome accession: NZ_CP007571
• Coordinates: 174830..175762 (+)
• Length: 310 a.a.
• NCBI ID: WP_000138506.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain GBS2-NM
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 169830..180762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK42_RS01035 (DK42_01045)	-	170043..171698 (+)	1656	WP_001118759.1	peptide ABC transporter substrate-binding protein	-
DK42_RS01040 (DK42_01050)	-	171816..172730 (+)	915	WP_000598965.1	ABC transporter permease	-
DK42_RS01045 (DK42_01055)	-	172740..173771 (+)	1032	WP_000764050.1	ABC transporter permease	-
DK42_RS01050 (DK42_01060)	oppD	173784..174830 (+)	1047	WP_000410284.1	ABC transporter ATP-binding protein	Regulator
DK42_RS01055 (DK42_01065)	amiF	174830..175762 (+)	933	WP_000138506.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 34855.67 Da
• Isoelectric Point: 6.7314

>NTDB_id=121084 DK42_RS01055 WP_000138506.1 174830..175762(+) (amiF) [Streptococcus agalactiae strain GBS2-NM]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTVGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPGHFVLSTPQEAEEYKKQIL

Nucleotide

• Length: 933 bp

>NTDB_id=121084 DK42_RS01055 WP_000138506.1 174830..175762(+) (amiF) [Streptococcus agalactiae strain GBS2-NM]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGTGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CTGTTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGCGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGATATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGACAACGACAA
CGTATCGGGATTGCACGTGCTTTAGCAGTAGAGCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTTAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGAAAACTGTTAGAAGTTGGAACATCTGATGAT
GTTTATAACAATCCAATCCACCCTTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACACCTGGTCATT
TTGTTTTATCTACACCCCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-267)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.545	99.355	0.542
amiF	Streptococcus thermophilus LMG 18311	54.221	99.355	0.539
amiF	Streptococcus salivarius strain HSISS4	54.426	98.387	0.535