Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   SE88_RS02285 Genome accession   NZ_CP010436
Coordinates   461630..461896 (-) Length   88 a.a.
NCBI ID   WP_001173702.1    Uniprot ID   O25190
Organism   Helicobacter pylori strain 26695-1MET     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 456630..466896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE88_RS02275 (SE88_02275) - 457178..459211 (-) 2034 WP_000655392.1 type IA DNA topoisomerase -
  SE88_RS02280 (SE88_02280) comB4 459214..461583 (-) 2370 WP_229311984.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  SE88_RS02285 (SE88_02285) comB3 461630..461896 (-) 267 WP_001173702.1 hypothetical protein Machinery gene
  SE88_RS02290 (SE88_02290) - 461897..462199 (-) 303 WP_000850076.1 hypothetical protein -
  SE88_RS02295 (SE88_02295) - 462196..463719 (-) 1524 WP_000323332.1 hypothetical protein -
  SE88_RS02300 (SE88_02300) - 463726..464019 (-) 294 WP_001160324.1 hypothetical protein -
  SE88_RS02305 (SE88_02305) - 464038..464817 (-) 780 WP_001158055.1 hypothetical protein -
  SE88_RS02310 (SE88_02310) - 464862..466007 (+) 1146 WP_001862501.1 DEAD/DEAH box helicase family protein -
  SE88_RS02315 (SE88_02315) - 466004..466390 (+) 387 WP_000691910.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10177.01 Da        Isoelectric Point: 4.8782

>NTDB_id=120585 SE88_RS02285 WP_001173702.1 461630..461896(-) (comB3) [Helicobacter pylori strain 26695-1MET]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFIFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=120585 SE88_RS02285 WP_001173702.1 461630..461896(-) (comB3) [Helicobacter pylori strain 26695-1MET]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTATATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O25190

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398

Multiple sequence alignment