Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GBS85147_RS05160 Genome accession   NZ_CP010319
Coordinates   1017869..1019602 (-) Length   577 a.a.
NCBI ID   WP_000647643.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS85147     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1012869..1024602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS85147_RS05130 (GBS85147_1045) - 1012938..1013774 (-) 837 WP_000455158.1 lipoate--protein ligase family protein -
  GBS85147_RS05135 (GBS85147_1046) coaB 1013928..1014614 (+) 687 WP_001873490.1 phosphopantothenate--cysteine ligase -
  GBS85147_RS05140 (GBS85147_1047) coaC 1014607..1015149 (+) 543 WP_000595814.1 phosphopantothenoylcysteine decarboxylase -
  GBS85147_RS05145 (GBS85147_1048) - 1015195..1015767 (+) 573 WP_000728786.1 ECF transporter S component -
  GBS85147_RS05150 (GBS85147_1049) - 1015877..1017595 (+) 1719 WP_017647127.1 phospho-sugar mutase -
  GBS85147_RS05155 - 1017658..1017855 (-) 198 WP_000746854.1 hypothetical protein -
  GBS85147_RS05160 (GBS85147_1050) rcrQ 1017869..1019602 (-) 1734 WP_000647643.1 ABC transporter ATP-binding protein Regulator
  GBS85147_RS05165 (GBS85147_1051) - 1019603..1021324 (-) 1722 WP_000826942.1 ABC transporter ATP-binding protein -
  GBS85147_RS05170 (GBS85147_1052) - 1021336..1021938 (-) 603 WP_000472259.1 lysozyme family protein -
  GBS85147_RS05175 (GBS85147_1053) - 1021940..1022917 (-) 978 WP_000968657.1 nucleoid-associated protein -
  GBS85147_RS05180 (GBS85147_1054) glyA 1022922..1024178 (-) 1257 WP_000575539.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64300.95 Da        Isoelectric Point: 7.8518

>NTDB_id=120086 GBS85147_RS05160 WP_000647643.1 1017869..1019602(-) (rcrQ) [Streptococcus agalactiae strain GBS85147]
MKASHPKKIQKKLVQDLLSKKSLVGMALLGTVVQVCLTVYLPVLIGQAVDVVLSPHSMILLLPIMWKMIAVILANTIIQW
INPLLYNRLIFHYVASLRKAVMEKLNQLPVAYLDKRGIGDLISRVTTDTEQLSNGLLMVFNQFFVGLLTILVTIFSMAKI
DLLMLFLVLFLTPLSLFLARFIAKKSYHLYQNQTASRGRQTQFIEEMVSQESLIQAFSAQEESSDHFRTINQEYANFSQS
AIFYSSTVNPSTRFINSLIYGFLAGIGALRIMSGAFSVGQLITFLNYVNQYTKPFNDISSVLSEMQSALACAERLYSILE
ESSPNITGTEKLDSSTVKGQIDFKNVVFGYNKSKPLLNGINLHIPAGAKVAIVGPTGAGKSTLINLLMRFYEVDEGNILL
DGKPITDYEPSQLRQEIGMVLQETWLKSATIHDNIAYANPKASRDEVIEAAKAANADFFIKQLPNGYDTYLEDAGDSLSQ
GQCQLLTIARIFLKLPRILILDEATSSIDTRTEVLVQEAFQMLMKGRTSFIIAHRLSTIQTADIILVMVSGEIVEVGNHS
ELMAQKGIYYQMQNAQK

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=120086 GBS85147_RS05160 WP_000647643.1 1017869..1019602(-) (rcrQ) [Streptococcus agalactiae strain GBS85147]
ATGAAAGCAAGTCATCCTAAAAAGATACAAAAAAAGCTTGTTCAAGATCTTCTTTCTAAAAAAAGCTTAGTAGGAATGGC
ATTATTAGGGACGGTTGTACAAGTTTGCCTCACTGTTTATTTGCCTGTTCTAATTGGACAAGCGGTAGACGTTGTATTAT
CACCTCATTCTATGATATTATTGTTACCTATAATGTGGAAGATGATTGCAGTCATTTTAGCAAATACTATTATTCAATGG
ATTAATCCTCTGCTCTATAACCGCTTAATTTTTCATTATGTTGCTTCTTTAAGAAAGGCTGTAATGGAAAAGTTGAATCA
ATTACCTGTAGCTTACCTTGATAAACGTGGCATAGGTGACTTGATTAGTCGTGTGACTACCGATACGGAGCAATTATCAA
ATGGTTTATTAATGGTTTTTAACCAGTTCTTTGTTGGTTTATTAACTATTCTAGTTACTATTTTTAGTATGGCAAAGATT
GATTTATTAATGCTTTTTTTGGTATTATTTCTGACGCCTTTATCACTCTTTCTAGCCCGCTTTATTGCTAAAAAGAGTTA
TCACTTATATCAAAATCAAACGGCATCACGAGGACGACAAACTCAATTCATTGAAGAGATGGTGAGTCAAGAAAGCCTTA
TTCAAGCATTCAGTGCGCAAGAAGAAAGTAGTGATCATTTTAGGACTATTAATCAAGAGTATGCTAACTTTTCTCAATCA
GCAATTTTTTATTCTTCGACTGTCAATCCATCAACCCGATTTATCAATAGTTTGATTTATGGCTTCTTAGCTGGGATTGG
TGCCCTTCGTATTATGTCAGGGGCTTTTAGTGTTGGTCAATTAATCACTTTCTTAAATTATGTCAATCAATATACTAAGC
CATTTAATGACATCTCTTCCGTCCTGTCTGAGATGCAAAGTGCTCTGGCTTGTGCAGAACGCCTTTACTCTATTTTAGAA
GAATCGTCACCAAATATAACAGGGACAGAAAAACTTGATTCATCAACGGTCAAGGGTCAAATCGATTTTAAAAATGTTGT
TTTTGGTTATAATAAATCAAAACCACTATTGAATGGTATTAATTTACACATTCCAGCAGGAGCTAAGGTCGCTATTGTAG
GACCAACAGGTGCTGGGAAGTCTACTTTAATCAATTTATTAATGCGTTTCTATGAAGTTGACGAGGGAAATATCCTTTTA
GATGGTAAGCCTATTACTGATTATGAGCCATCACAATTAAGGCAAGAAATTGGAATGGTATTACAAGAAACGTGGTTAAA
AAGTGCTACGATTCACGATAACATTGCATATGCCAATCCTAAAGCTAGCCGTGACGAAGTGATAGAGGCTGCAAAAGCAG
CTAATGCAGATTTCTTTATCAAACAATTACCGAATGGATATGATACGTATTTAGAAGATGCTGGAGATTCGTTATCACAG
GGGCAATGTCAGCTATTGACAATTGCTCGTATTTTTCTTAAATTACCTAGAATATTGATATTAGATGAGGCGACATCGTC
TATAGATACTCGTACTGAAGTTCTTGTTCAAGAAGCATTCCAAATGTTGATGAAGGGGAGAACAAGCTTTATTATTGCAC
ATCGCTTATCTACCATTCAAACAGCAGATATTATTTTAGTTATGGTATCTGGTGAAATTGTAGAAGTGGGTAACCACTCT
GAATTAATGGCTCAAAAAGGTATTTATTATCAAATGCAAAATGCGCAAAAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(25-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.814

97.92

0.36

Multiple sequence alignment