Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   CF65_RS09535 Genome accession   NZ_CP007502
Coordinates   1987158..1987679 (-) Length   173 a.a.
NCBI ID   WP_005573910.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans HK1651     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1982158..1992679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF65_RS09515 (CF65_02821) rimI 1982395..1982838 (+) 444 WP_025298521.1 ribosomal protein S18-alanine N-acetyltransferase -
  CF65_RS09520 (CF65_02823) recC 1982840..1986256 (-) 3417 WP_038573224.1 exodeoxyribonuclease V subunit gamma -
  CF65_RS09525 (CF65_02824) - 1986268..1986507 (-) 240 WP_025298523.1 DUF5374 domain-containing protein -
  CF65_RS09530 (CF65_02826) - 1986473..1987171 (-) 699 WP_038573332.1 type II secretion system protein J -
  CF65_RS09535 (CF65_02827) comN 1987158..1987679 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  CF65_RS09555 (CF65_02829) pal 1988384..1988851 (-) 468 WP_025298525.1 peptidoglycan-associated lipoprotein Pal -
  CF65_RS09560 (CF65_02830) tolB 1988866..1990146 (-) 1281 WP_005567685.1 Tol-Pal system beta propeller repeat protein TolB -
  CF65_RS09565 (CF65_02832) tolA 1990181..1991389 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  CF65_RS09570 (CF65_02834) tolR 1991406..1991828 (-) 423 WP_005545585.1 colicin uptake protein TolR -
  CF65_RS09575 (CF65_02836) tolQ 1991914..1992603 (-) 690 WP_005545584.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19832.99 Da        Isoelectric Point: 8.4896

>NTDB_id=120065 CF65_RS09535 WP_005573910.1 1987158..1987679(-) (comN) [Aggregatibacter actinomycetemcomitans HK1651]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGKRWCLTAQ
IKNSHLCDCLNPVACPQNVSAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTASTTCFVLQANQQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=120065 CF65_RS09535 WP_005573910.1 1987158..1987679(-) (comN) [Aggregatibacter actinomycetemcomitans HK1651]
ATGCAAAAGGGATTCACTTTGTTGGAAATGTTAATAGCATTATTTATTATCAGCCTGTTACTGACACTGGCTTTGCCGGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAAGCGCTGGTGTTTGACAGCGCAA
ATTAAAAATAGCCATTTGTGCGATTGCCTAAATCCTGTTGCTTGCCCGCAAAATGTTTCCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACTGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGGCTT
CTACCACTTGTTTTGTGCTACAAGCCAATCAGCAGCGTACTTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAG
GATAACCAATCTTTGAGTGCTTGTGTCAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578

Multiple sequence alignment