Detailed information NTG0119834

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: RP72_RS06265
• Genome accession: NZ_CP010314
• Coordinates: 1202022..1202939 (+)
• Length: 305 a.a.
• NCBI ID: WP_003232954.1
• Uniprot ID: A0A9W5LHY5
• Organism: Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1197022..1207939

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RP72_RS06250 (RP72_06250)	trpS	1197602..1198594 (-)	993	WP_003245134.1	tryptophan--tRNA ligase	-
RP72_RS06255 (RP72_06255)	oppA	1199338..1200975 (+)	1638	WP_003232957.1	oligopeptide ABC transporter substrate-binding protein OppA	-
RP72_RS06260 (RP72_06260)	oppB	1201083..1202018 (+)	936	WP_003245554.1	oligopeptide ABC transporter permease OppB	-
RP72_RS06265 (RP72_06265)	amiD	1202022..1202939 (+)	918	WP_003232954.1	oligopeptide ABC transporter permease OppC	Regulator
RP72_RS06270 (RP72_06270)	oppD	1202944..1204020 (+)	1077	WP_014906294.1	oligopeptide ABC transporter ATP-binding protein OppD	-
RP72_RS06275 (RP72_06275)	oppF	1204022..1204939 (+)	918	WP_003245567.1	oligopeptide ABC transporter ATP-binding protein OppF	-
RP72_RS06280 (RP72_06280)	yjbB	1205046..1206263 (+)	1218	WP_010886478.1	MFS transporter	-
RP72_RS06285 (RP72_06285)	yjbC	1206427..1207005 (+)	579	WP_003244921.1	GNAT family N-acetyltransferase	-
RP72_RS06290 (RP72_06290)	spx	1207186..1207581 (+)	396	WP_003245483.1	transcriptional regulator Spx	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33621.12 Da
• Isoelectric Point: 10.2873

>NTDB_id=119834 RP72_RS06265 WP_003232954.1 1202022..1202939(+) (amiD) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide

• Length: 918 bp

>NTDB_id=119834 RP72_RS06265 WP_003232954.1 1202022..1202939(+) (amiD) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (121-305)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-79)

3D structure

• AlphaFold DB: A0A9W5LHY5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	35.922	100	0.364
amiD	Streptococcus thermophilus LMD-9	35.922	100	0.364