Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BADO_RS00540 Genome accession   NZ_CP007443
Coordinates   142370..144121 (+) Length   583 a.a.
NCBI ID   WP_038443856.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain 22L     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 137370..149121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BADO_RS00515 (BADO_0098) - 138133..139047 (-) 915 WP_080716505.1 thiazole synthase -
  BADO_RS00520 (BADO_0099) thiF 139204..139917 (-) 714 WP_003807371.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BADO_RS00525 (BADO_0100) thiS 139970..140164 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  BADO_RS00530 (BADO_0101) - 140600..141568 (+) 969 WP_038443852.1 aldo/keto reductase -
  BADO_RS00535 (BADO_0102) - 141752..142243 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  BADO_RS00540 (BADO_0103) rcrP 142370..144121 (+) 1752 WP_038443856.1 ABC transporter ATP-binding protein Regulator
  BADO_RS00545 (BADO_0104) rcrQ 144133..145974 (+) 1842 WP_038443858.1 ABC transporter ATP-binding protein Regulator
  BADO_RS00550 (BADO_0105) - 146145..147125 (+) 981 WP_021912920.1 aldo/keto reductase -
  BADO_RS00555 (BADO_0106) - 147139..148191 (-) 1053 WP_003807383.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64499.58 Da        Isoelectric Point: 5.3140

>NTDB_id=119393 BADO_RS00540 WP_038443856.1 142370..144121(+) (rcrP) [Bifidobacterium adolescentis strain 22L]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMSDITQLVETPGSEMRDIWVAGGKMLLVSLGSAACAIVTGFIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLVVIAVLMHFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTVMNGLMLAVYWIGAYLIDAADAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVTDGTQDAGKPGEEGEIEFRNVSFAYPDSRQAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=119393 BADO_RS00540 WP_038443856.1 142370..144121(+) (rcrP) [Bifidobacterium adolescentis strain 22L]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
CTGGCTTGACCTGACCCTGCCGGACTACATGTCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGCGAAATGCGCGACA
TCTGGGTGGCCGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCGGCGGCCTGCGCCATCGTCACCGGCTTCATCGCCGCG
CGCGTGGGCGCCTCGTTCAGCCAGCGCCTGCGTTCGCTCGAATTCAACAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGCTCATGCACTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCGTACAACGCCGAGG
ACTACCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAGACCCAGCTGTTCACCAACCGTGCCATGGCCATC
ATGATGCCGTTGATGAACACCGTCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTTATCGACGCTGC
CGACGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGAGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCACCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCAGGCCATGTTGGAAGGCGTCAATTTCAAAGCCAAGAAGGGTCAGACGGTGGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTATGATTCCGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAACTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.586

100

0.518

Multiple sequence alignment