Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RG73_RS04110 Genome accession   NZ_CP010242
Coordinates   757047..757514 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain S56     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 752047..762514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG73_RS04060 (RG73_03825) rplP 752157..752567 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  RG73_RS04065 (RG73_03830) rpsC 752580..753281 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  RG73_RS04070 (RG73_03835) rplV 753299..753631 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  RG73_RS04075 (RG73_03840) rpsS 753646..753924 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  RG73_RS04080 (RG73_03845) rplB 753941..754762 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  RG73_RS04085 (RG73_03850) rplW 754780..755082 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  RG73_RS04090 (RG73_03855) rplD 755079..755684 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  RG73_RS04095 (RG73_03860) rplC 755695..756324 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  RG73_RS04100 (RG73_03865) rpsJ 756357..756668 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  RG73_RS04110 (RG73_03875) pilD 757047..757514 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  RG73_RS04115 (RG73_03880) bfr 757511..757987 (-) 477 WP_000675515.1 bacterioferritin -
  RG73_RS04120 (RG73_03885) bfd 758060..758254 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RG73_RS04130 (RG73_03890) tuf 758437..759621 (-) 1185 WP_000031783.1 elongation factor Tu -
  RG73_RS04135 (RG73_03895) fusA 759692..761806 (-) 2115 WP_000124700.1 elongation factor G -
  RG73_RS04140 (RG73_03900) rpsG 761903..762373 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=118912 RG73_RS04110 WP_000339836.1 757047..757514(+) (pilD) [Escherichia coli strain S56]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=118912 RG73_RS04110 WP_000339836.1 757047..757514(+) (pilD) [Escherichia coli strain S56]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361