Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KHU1_RS07310 Genome accession   NZ_CP007242
Coordinates   1469144..1469923 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens KHG19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1464144..1474923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS07290 (KHU1_1413) trmFO 1464831..1466138 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KHU1_RS07295 (KHU1_1414) xerC 1466208..1467125 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  KHU1_RS07300 (KHU1_1415) hslV 1467141..1467686 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  KHU1_RS07305 (KHU1_1416) hslU 1467703..1469106 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  KHU1_RS07310 (KHU1_1417) codY 1469144..1469923 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KHU1_RS07315 (KHU1_1418) flgB 1470277..1470666 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  KHU1_RS07320 (KHU1_1419) flgC 1470666..1471118 (+) 453 WP_039063101.1 flagellar basal body rod protein FlgC -
  KHU1_RS07325 (KHU1_1420) fliE 1471129..1471449 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  KHU1_RS07330 (KHU1_1421) fliF 1471492..1473102 (+) 1611 WP_042635191.1 flagellar basal-body MS-ring/collar protein FliF -
  KHU1_RS07335 (KHU1_1422) fliG 1473115..1474131 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  KHU1_RS07340 (KHU1_1423) fliH 1474124..1474879 (+) 756 WP_007409779.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=118137 KHU1_RS07310 WP_003154263.1 1469144..1469923(+) (codY) [Bacillus amyloliquefaciens KHG19]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=118137 KHU1_RS07310 WP_003154263.1 1469144..1469923(+) (codY) [Bacillus amyloliquefaciens KHG19]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment