Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BE24_RS05520 Genome accession   NZ_CP007208
Coordinates   1148699..1151086 (-) Length   795 a.a.
NCBI ID   WP_038678681.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain HKUOPL8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1143699..1156086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE24_RS05500 (BE24_05745) - 1144611..1144943 (-) 333 WP_029377133.1 DUF1292 domain-containing protein -
  BE24_RS05505 (BE24_05750) ruvX 1144960..1145388 (-) 429 WP_029377132.1 Holliday junction resolvase RuvX -
  BE24_RS05510 (BE24_05755) - 1145392..1145652 (-) 261 WP_038678679.1 IreB family regulatory phosphoprotein -
  BE24_RS05515 (BE24_05760) alaS 1145721..1148350 (-) 2630 Protein_1125 alanine--tRNA ligase -
  BE24_RS05520 (BE24_05765) recD2 1148699..1151086 (-) 2388 WP_038678681.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BE24_RS05525 (BE24_05770) - 1151090..1151758 (-) 669 WP_029377128.1 tetratricopeptide repeat protein -
  BE24_RS05530 (BE24_05775) mnmA 1151891..1153003 (-) 1113 WP_029377127.1 tRNA 2-thiouridine(34) synthase MnmA -
  BE24_RS05535 (BE24_05780) - 1153004..1154149 (-) 1146 WP_029377126.1 cysteine desulfurase family protein -
  BE24_RS05540 (BE24_05785) sal 1154210..1155841 (-) 1632 WP_080704783.1 Sal family ABC-F type ribosomal protection protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89573.10 Da        Isoelectric Point: 4.5117

>NTDB_id=117759 BE24_RS05520 WP_038678681.1 1148699..1151086(-) (recD2) [Staphylococcus xylosus strain HKUOPL8]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVEKKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGEIEERNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGETIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCAFLKAYFNNEEETETADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=117759 BE24_RS05520 WP_038678681.1 1148699..1151086(-) (recD2) [Staphylococcus xylosus strain HKUOPL8]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGATGCGATTTTGTTTCAAAACAAAGAGAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAATGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
ATATTGCAGAAGGTGACGTCTATACATTTAAAGGCCAAGTAGTTACGCATGCAAAATATGGCAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGATCTTTTTAAAGGAATAGGAAA
AAAAACAGCTCAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTATATTAGAAA
AAGTGCCTAGTTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATCGCAAGTAATCAAGAAACGGAACAAATTATC
ATTCGCCTCCATGATCTAGGTTTTGGGCCAAAGTTAGCAATGGCTATATACCAAGCATATTTAGGCGAAACACTTAACGT
AGTTGAAAAAAAACCTTATCAACTTGTATATGATGTCAAAGGCATCGGTTTTAATAAGGCAGACACATTAGCGCGTAATG
TCGGCATTCAATTTAACGATGCAGAACGTCTTAAAGCAGGGTTACTTTATGTGTTAGAAGAAGAGTGTATAAAACAAGGT
CATACGTATTTACCTACTAATAATGTACTAGAGATGACCCAAGATATGCTATCACAACCACCAGGTGAATTAATAGAAAC
TCAGCAGCTTGAGCAAGTTTTACAAGATTTAGTCAATGACACTAAATTAATTCAACAAGAAAATGAAGTTGCGATCCCAA
GTTTATACTATTCAGAATTGAAAAGCGTTCAAAATTTATACCGTAATTTTTCTTATACAAATAAACTAAAAGAAATTGAG
CAATCTGATTTGCTGCTTGAAATAGGAGAAATTGAGGAACGCAATAAAGTGACATATGCAGATTCTCAAAGAGAAGCCTT
GCAAACAGCGATTAACTCTAAAATAATGTTACTGACAGGTGGCCCAGGTACAGGAAAAACAACTGTCATTAAAGGAATTG
TTGAACTTTATGCAGAGTTGCATGGTCTATCATTAGATTATGACGATTATCAAAATGATGATTATCCGGTAGTTCTAGGT
GCGCCGACTGGACGTGCATCGAAGCGTTTGTCAGAGTCAACAGGTTTAGAGGCTATGACGATACATCGCTTAATAGGTTG
GAATCAAGATACGCAACCAGAAGATATCTTAGATAATGAAATTTCTGCAAAACTTATTATTATTGATGAAATGTCAATGG
TTGATACATGGTTATTCCATCAATTTTTGAGTGCTGTACCTATTGATGCGCAAGTTATACTAGTCGGTGATGAAGATCAG
TTGCCATCTGTTGGACCAGGCCAAGTATTTAAAGATCTAATTGACTCGAAAGTAATTCCTCGTGTAAATTTAACTGAAGT
TTACCGACAACAAGATGGCTCAAGTATTATAGAATTAGCACATAGGATGAAACTAGGAGAAACTATTGATATTACACAGA
GGTTTCATGACCGTAATTTTATAAACTGTACAACAGAACAGATACCCTCAGTTGTTGAAAAAGTGGTATCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGGTCTGCAGGTATTAAGAAGCTAAATAC
AGTATTGCAAGATATCTTGAATCCCAAAGAACAAGATACTAGAGAAATTGAGTTTGGTGATATTGTCTTTAGAAAAGGTG
ATAAGGTATTACAACTAGTTAACCGACCAAGTGATAATATATTTAATGGTGATATCGGGGTCATTGTAGGCATCTTCTGG
GCTAAAGAAAATGCATTAAACAAAGATGTTTTGGTAGTTGATTTTGAAGGTAATGAGATTACATTTGTTCGTCAAGACTT
AATGGAGTTGACGCATGCCTATTGTACTTCAATTCATAAGTCACAAGGATCAGAATTTCCAATTGTGATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATATTATATACAGGTTTAACACGTGCCAAACAGTCACTTGTGTTCTTA
GGAGATCCGCAAGCATTTGATATTGGTCTAAAGACTCACGGCCAAGTGAGAATGACGCAATTGTGTGCTTTTCTTAAAGC
GTATTTTAATAATGAGGAAGAAACTGAAACTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTGTCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGTGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.126

99.874

0.501

Multiple sequence alignment