Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   BD33_RS06620 Genome accession   NZ_CP007193
Coordinates   1278867..1279382 (-) Length   171 a.a.
NCBI ID   WP_052778359.1    Uniprot ID   A0A5T1DDV9
Organism   Campylobacter jejuni strain NS4-9-1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1273867..1284382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BD33_RS06605 (BD33_06655) - 1273979..1275796 (-) 1818 WP_052778361.1 motility associated factor glycosyltransferase family protein -
  BD33_RS06610 (BD33_06660) - 1275793..1277616 (-) 1824 WP_052778360.1 motility associated factor glycosyltransferase family protein -
  BD33_RS06615 (BD33_06665) - 1277626..1278867 (-) 1242 WP_002864247.1 DUF2920 family protein -
  BD33_RS06620 (BD33_06670) ctsG 1278867..1279382 (-) 516 WP_052778359.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BD33_RS06625 (BD33_06675) tsaD 1279383..1280390 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  BD33_RS06630 (BD33_06680) - 1280387..1281781 (-) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  BD33_RS06635 (BD33_06685) dxr 1281783..1282853 (-) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  BD33_RS06640 (BD33_06690) cdsA 1282850..1283575 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  BD33_RS06645 (BD33_06695) - 1283584..1283922 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18677.58 Da        Isoelectric Point: 7.1352

>NTDB_id=117373 BD33_RS06620 WP_052778359.1 1278867..1279382(-) (ctsG) [Campylobacter jejuni strain NS4-9-1]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKANFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=117373 BD33_RS06620 WP_052778359.1 1278867..1279382(-) (ctsG) [Campylobacter jejuni strain NS4-9-1]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTAA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1DDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment